Xanthomonas campestris M28 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Xanthomonas campestris M28 RM systems
Ref: Revin,V. et al. unpublished
REBASE ref # 31384
Complete sequence: 5,102,828 bp
GenBank #: CP062066
REBASE acronym: XcaM28
Org_num: 45204
All begin IFJ81_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6485 | M48 family metallopeptidase | |||
| 6490 | R | XcaSB80ORF6055P (100% identity) | CAAGNNNNNCTTA | XcaM28ORF6505P |
| 6495 | S | S.Xcacc2ORF6130P (100% identity) | CAAGNNNNNCTTA | S.XcaM28ORF6505P |
| 6500 | damage-inducible protein D | |||
| 6505 | M | M.Xcacc2ORF6130P (100% identity) | CAAGNNNNNCTTA | M.XcaM28ORF6505P |
| 6510 | restriction endonuclease subunit S | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3080 | IS3-like element IS1404 family transposase | |||
| 3085 | R | XcaSB80ORF2990P (98% identity) | XcaM28ORF3085P | |
| 3090 | 90 aa hypothetical protein | |||
| 19205 | DUF4238 domain-containing protein | |||
| 19210 | M | M.XcaCORF2967P (94% identity) | M.XcaM28ORF19210P | |
| 19220 | phage portal protein | |||
| 21920 | 171 aa hypothetical protein | |||
| ??? | M | M.XcaXCC1ORFDP (100% identity) | M.XcaM28ORF21925P | |
| 21930 | exodeoxyribonuclease V subunit beta | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15815 | ATP-dependent helicase | |||
| 15820 | M | M.XcaXc86ORFDP (94% identity) | M.XcaM28ORF15820P | |
| 15825 | IS5 family transposase | |||
| 15830 | 58 aa hypothetical protein | |||
| 15835 | R | XcaXc86ORFDP (87% identity) | XcaM28ORF15820P | |
| 15840 | type II toxin-antitoxin system RelE/ParE family | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7370 | 71 aa hypothetical protein | |||
| 7375 | R | Xcacc2McrBP (99% identity) | XcaM28McrBP | |
| 7380 | R | Xcacc2McrCP (98% identity) | XcaM28McrCP | |
| 7385 | sensor histidine kinase | |||