Photobacterium damselae subsp. piscicida AS-16-0540-1 |
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Putative Photobacterium damselae subsp. piscicida AS-16-0540-1 RM systems
Ref: Baseggio,L. et al. unpublished
REBASE ref # 31337
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,230,241 bp | CP061854 |
| chromosome 2: | 1,136,236 bp | CP061855 |
| plasmid unnamed3: | 23,190 bp | CP061859 |
REBASE acronym: Pda5401
Org_num: 44937
All begin IC627_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 7655 | 130 aa hypothetical protein | |||
| 7660 | M | M.Pda91197ORF1650P (96% identity) | M.Pda5401ORF7660P | |
| 7665 | S | S.Pda91197ORF1650P (100% identity) | S.Pda5401ORF7660P | |
| 7670 | serine/threonine-protein kinase | |||
| chromosome 2 | ||||
| 15760 | 88 aa hypothetical protein | |||
| 15765 | R | R1.Pda91197ORF724P (99% identity) | Pda5401ORF15785P | |
| 15770 | group II intron reverse transcriptase/maturase | |||
| 15775 | 59 aa hypothetical protein | |||
| 15780 | S | S.Pda91197ORF724P (100% identity) | S.Pda5401ORF15785P | |
| 15785 | M | M.Pda91197ORF724P (100% identity) | M.Pda5401ORF15785P | |
| 15790 | IS1-like element ISPda1 family transposase | |||
| 18070 | 64 aa hypothetical protein | |||
| 18075 | R | Pda91197ORF114P (98% identity) | Pda5401ORF18090P | |
| 18080 | SIR2 family protein | |||
| 18085 | S | S.Pda91197ORF114P (100% identity) | S.Pda5401ORF18090P | |
| 18090 | M | M.Pda5557ORF21340P (100% identity) | M.Pda5401ORF18090P | |
| 18095 | 130 aa hypothetical protein | |||
| 18145 | restriction endonuclease subunit S | |||
| 18150 | M | M.Pda91197ORF103P (100% identity) | M.Pda5401ORF18150P | |
| 18155 | S | S.Pda5557ORF21400P (100% identity) | S.Pda5401ORF18150P | |
| 18160 | R | Pda91197ORF103P (100% identity) | Pda5401ORF18150P | |
| 18165 | M48 family metallopeptidase | |||
| 20165 | ribosome biogenesis GTPase YlqF | |||
| 20170 | R | R2.Pda91197ORF1067P (100% identity) | Pda5401ORF20185AP | |
| 20175 | IS1-like element ISPda1 family transposase | |||
| 20180 | R | Pda5557ORF17415BP (100% identity) | Pda5401ORF20185BP | |
| 20185 | M | M.Pda91197ORF1067P (100% identity) | M.Pda5401ORF20185P | |
| 20190 | restriction endonuclease subunit S | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1110 | AAA family ATPase | |||
| 1115 | M | M.Pda91197ORF3020P (100% identity) | GATC | M.Pda5401DamP |
| 1120 | DUF2970 domain-containing protein | |||
| 9470 | 62 aa hypothetical protein | |||
| 9475 | M | M.Pda5557ORF9450P (100% identity) | M.Pda5401ORF9475P | |
| 9480 | RM | Pda5557ORF9450P (100% identity) | Pda5401ORF9475P | |
| 9485 | 257 aa hypothetical protein | |||
| chromosome 2 | ||||
| 16135 | IS3 family transposase | |||
| 16140 | M | M.Pda5557ORF19415P (100% identity) | M.Pda5401ORF16140P | |
| ??? | R | Pda91197ORF625BP (100% identity) | Pda5401ORF16140BP | |
| 16145 | 64 aa hypothetical protein | |||
| 16150 | IS91-like element ISPda2 family transposase | |||
| 16155 | 64 aa hypothetical protein | |||
| 16160 | IS91-like element ISPda2 family transposase | |||
| 16165 | R | Pda5557ORF19415AP (100% identity) | Pda5401ORF16140AP | |
| 16170 | 94 aa hypothetical protein | |||
| 21095 | HD domain-containing protein | |||
| 21100 | M | M.Pda91197ORF813P (100% identity) | M.Pda5401ORF21100P | |
| 21105 | alpha/beta fold hydrolase | |||
| plasmid unnamed3 | ||||
| 23065 | IS1-like element ISPda1 family transposase | |||
| 23070 | M | M.Pda5557ORF22960P (100% identity) | M.Pda5401ORF23070P | |
| 23075 | 62 aa hypothetical protein | |||