Escherichia coli O145 RM8988-C1 |
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Putative Escherichia coli O145 RM8988-C1 RM systems
Ref: Carter,M.Q. and Pham,A.C. unpublished
REBASE ref # 29329
| Sequence length: | GenBank #: | |
| Chromosome: | 5,458,186 bp | CP035770 |
| plasmid pRM8988-C1: | 88,752 bp | CP035771 |
REBASE acronym: Eco8988
Org_num: 44683
All begin EW646_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12335 | M48 family metallopeptidase | |||
| 12340 | R | EcoSO173ORF28895P (100% identity) | Eco8988ORF12360P | |
| 12345 | cold shock domain-containing protein | |||
| 12350 | YecA family protein | |||
| 12355 | S | S.EcoSO173ORF28895P (95% identity) | S.Eco8988ORF12360P | |
| 12360 | M | M.EcoSO173ORF28895P (85% identity) | M.Eco8988ORF12360P | |
| 12365 | protein sbmA | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5825 | recombination protein NinB | |||
| 5830 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco8988ORF5830P |
| 5835 | NinE family protein | |||
| 10485 | DUF1737 domain-containing protein | |||
| 10495 | M | M.EcoTWORF1742P (100% identity) | M.Eco8988ORF10495P | |
| 10500 | TrmB family transcriptional regulator | |||
| 12935 | drug/metabolite exporter YedA | |||
| 12940 | V | V.SsoSE61DcmP (100% identity) | V.Eco8988DcmP | |
| 12945 | M | M.EcoXJ63DcmP (100% identity) | CCWGG | M.Eco8988DcmP |
| 12950 | phosphohydrolase | |||
| 15725 | Com family DNA-binding transcriptional | |||
| 15730 | M | M.EcoM9ORF12010P (100% identity) | M.Eco8988ORF15730P | |
| 15735 | 4-phosphoerythronate dehydrogenase | |||
| 17370 | NinE family protein | |||
| 17375 | M | M.EcoTrh52ORF21975P (100% identity) | GATC | M.Eco8988ORF3905P |
| 17380 | IS3-like element IS629 family transposase | |||
| 20610 | DNA-binding transcriptional regulator Fis | |||
| 20615 | M | M.SflWW1ORF2205P (100% identity) | ATGCAT | M.Eco8988ORF20615P |
| 20620 | DUF2556 domain-containing protein | |||
| 21145 | ribulose-phosphate 3-epimerase | |||
| 21150 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco8988DamP |
| 21155 | cell division protein DamX | |||
| 24365 | 77 aa hypothetical protein | |||
| 24370 | M | M.SflFF35ORF20P (100% identity) | M.Eco8988ORF24370P | |
| 24375 | 330 aa hypothetical protein | |||
| 26725 | 59 aa hypothetical protein | |||
| 26730 | R | EcoE115ORF5147P (100% identity) | Eco8988ORF26730P | |
| 26735 | N-acetylneuraminate epimerase | |||
| 26765 | DEAD/DEAH box helicase | |||
| 26770 | RM | EcoE115ORF5155P (100% identity) | Eco8988ORF26770P | |
| 26775 | IS3-like element IS629 family transposase | |||
| plasmid pRM8988-C1 | ||||
| 27810 | 102 aa hypothetical protein | |||
| 27815 | M | M.EcopO26ORF185P (100% identity) | SAY | M.Eco8988ORF27815P |
| 27820 | 72 aa hypothetical protein | |||