Escherichia coli LD67-1 |
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Putative Escherichia coli LD67-1 RM systems
Ref: Lu,X. unpublished
REBASE ref # 26550
| Sequence length: | GenBank #: | |
| Chromosome: | 5,023,887 bp | CP061185 |
| plasmid pLD67-1-157kb: | 157,028 bp | CP061187 |
| plasmid pLD67-1-165kb: | 165,427 bp | CP061188 |
REBASE acronym: Eco671
Org_num: 44674
All begin IB283_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12675 | M48 family metallopeptidase | |||
| 12680 | R | Ecoppa2ORF22455P (100% identity) | GATGNNNNNNTAC | Eco671ORF12700P |
| 12685 | cold shock domain-containing protein | |||
| 12690 | YecA family protein | |||
| 12695 | S | S.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | S.Eco671ORF12700P |
| 12700 | M | M.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | M.Eco671ORF12700P |
| 12705 | IS3 family transposase | |||
| 18425 | lactate utilization protein C | |||
| 18430 | R | EcoW087ORF4400P (100% identity) | Eco671ORF18440P | |
| 18435 | S | S.EcoWH398ORF26840P (100% identity) | S.Eco671ORF18440P | |
| 18440 | M | M.Ecos641ORF18845P (100% identity) | M.Eco671ORF18440P | |
| 18445 | DNA-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2370 | 332 aa hypothetical protein | |||
| 2375 | R | Ecoppa2ORF12035P (100% identity) | Eco671ORF2375P | |
| 2380 | HNH endonuclease | |||
| 2415 | DEAD/DEAH box helicase | |||
| 2420 | RM | EcoZ30ORF19095P (100% identity) | Eco671ORF2420P | |
| 12945 | drug/metabolite exporter YedA | |||
| 12950 | V | V.Ecoppa2DcmP (100% identity) | V.Eco671DcmP | |
| 12955 | M | M.Ecoppa2DcmP (100% identity) | CCWGG | M.Eco671DcmP |
| 12960 | phosphohydrolase | |||
| 13390 | protein ninD | |||
| 13395 | M | M.SflN97ORF15810P (100% identity) | GATC | M.Eco671ORF13395P |
| 13400 | recombination protein NinB | |||
| 20470 | DNA-binding transcriptional regulator Fis | |||
| 20475 | M | M.Ecoppa2ORF6235P (100% identity) | ATGCAT | M.Eco671ORF20475P |
| 20480 | DUF2556 family protein | |||
| 21000 | ribulose-phosphate 3-epimerase | |||
| 21005 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco671DamP |
| 21010 | cell division protein DamX | |||
| plasmid pLD67-1-157kb | ||||
| 24535 | 55 aa hypothetical protein | |||
| 24540 | M | M.YpsF1ORFCP (100% identity) | M.Eco671ORF24540P | |
| 24545 | thermonuclease family protein | |||
| 24795 | DNA-binding protein | |||
| 24800 | M | M.YpsF1ORFDP (100% identity) | M.Eco671ORF24800P | |
| 24805 | 284 aa hypothetical protein | |||
| plasmid pLD67-1-165kb | ||||
| 25465 | 73 aa hypothetical protein | |||
| 25470 | M | M.SflN92ORF24820P (100% identity) | M.Eco671ORF25470P | |
| 25475 | 101 aa hypothetical protein | |||