Microbial mat metagenome |
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Putative Microbial mat metagenome RM systems
Ref: Wilbanks,E.G. unpublished
REBASE ref # 31234
GenBank #: JAEPEX000000000
REBASE acronym: Mme286
Org_num: 44531
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20 | integrase | |||
| 23 | R | OspA1IIP (100% identity) | ATGNNNNNNCTGG | Mme286ORFR1P |
| 27 | restriction endonuclease | |||
| 28 | 131 aa hypothetical protein | |||
| 29 | 114 aa hypothetical protein | |||
| 30 | 61 aa hypothetical protein | |||
| 31 | 128 aa hypothetical protein | |||
| 32 | 78 aa hypothetical protein | |||
| 31 | 59 aa hypothetical protein | |||
| 33 | S | S.OspA1II (100% identity) | ATGNNNNNNCTGG | S.Mme286ORFR1P |
| 37 | M | M.OspA1II (100% identity) | ATGNNNNNNCTGG | M.Mme286ORFR1P |
| 40 | 230 aa hypothetical protein | |||
| 37 | N-6 DNA methylase | |||
| ??? | M | M.DspSRB1ORF20465P (63% identity) | M.Mme286ORFXP | |
| ??? | S | S.DspSRB1ORF18335P (74% identity) | S.Mme286ORFXP | |
| 55 | 108 aa hypothetical protein | |||
| 323 | 1010 aa hypothetical protein | |||
| 330 | R | RspA2ORFD1P (100% identity) | Mme286ORFZP | |
| 332 | NYN domain-containing protein | |||
| 335 | 82 aa hypothetical protein | |||
| 338 | S | S.RspA2ORFD1P (61% identity) | S.Mme286ORFA1P | |
| 340 | restriction endonuclease subunit S | |||
| 409 | 103 aa hypothetical protein | |||
| 410 | R | RspA2ORFDP (100% identity) | Mme286ORFYP | |
| 415 | S | S.RspA2ORFDP (100% identity) | S.Mme286ORFYP | |
| 419 | DUF4917 family protein | |||
| ??? | M | M.RspA2ORFDP (100% identity) | M.Mme286ORFYP | |
| 325 | DUF3696 domain-containing protein | |||
| 329 | M | M.DspSRB1III (100% identity) | M.Mme286ORFVP | |
| 334 | S | S1.AthLicORFNP (33% identity) | S1.Mme286ORFVP | |
| 335 | S | S.DspSRB1III (100% identity) | GCANNNNNNNGTTG | S2.Mme286ORFVP |
| 338 | R | DspSRB1IIIP (95% identity) | Mme286ORFVP | |
| 341 | 60 aa hypothetical protein | |||
| 343 | virulence RhuM family protein | |||
| 347 | R | DspSRB1ORF16290P (99% identity) | Mme286ORFUP | |
| 352 | S8 family peptidase | |||
| 352 | 120 aa hypothetical protein | |||
| 353 | 246 aa hypothetical protein | |||
| 354 | 158 aa hypothetical protein | |||
| 355 | 138 aa hypothetical protein | |||
| 356 | 195 aa hypothetical protein | |||
| 357 | 322 aa hypothetical protein | |||
| 358 | 159 aa hypothetical protein | |||
| 358 | 71 aa hypothetical protein | |||
| 359 | 95 aa hypothetical protein | |||
| 360 | 161 aa hypothetical protein | |||
| 361 | 212 aa hypothetical protein | |||
| 362 | 117 aa hypothetical protein | |||
| 363 | 80 aa hypothetical protein | |||
| 364 | 75 aa hypothetical protein | |||
| 365 | 65 aa hypothetical protein | |||
| 366 | 347 aa hypothetical protein | |||
| 366 | 193 aa hypothetical protein | |||
| 367 | 437 aa hypothetical protein | |||
| 368 | 126 aa hypothetical protein | |||
| 367 | 145 aa hypothetical protein | |||
| 369 | S | S.DspSRB1ORF7005P (100% identity) | S.Mme286ORFUP | |
| 372 | M | M.DspSRB1ORF7005P (100% identity) | M.Mme286ORFUP | |
| 375 | 83 aa hypothetical protein | |||
| 462 | four helix bundle protein | |||
| 465 | S | S2.TspPSB1VI (95% identity) | CAGNNNNNNNRTANYC | S2.Mme286ORFJP |
| 467 | S | S1.TspPSB1VIP (100% identity) | S1.Mme286ORFJP | |
| 468 | M | M.TspPSB1VI (100% identity) | M.Mme286ORFJP | |
| 472 | R | TspPSB1VIP (100% identity) | Mme286ORFJP | |
| 475 | 93 aa hypothetical protein | |||
| 997 | ribbon-helix-helix protein, CopG family | |||
| 998 | M | M.TspPSB1VIII (100% identity) | M.Mme286ORFMP | |
| 1000 | S | S.TspQ5ORF7630P (20% identity) | S1.Mme286ORFMP | |
| 1003 | S | S.TspPSB1VIII (92% identity) | S2.Mme286ORFMP | |
| 1005 | cell filamentation protein Fic | |||
| 1005 | 60 aa hypothetical protein | |||
| 1006 | 138 aa hypothetical protein N838_16590 | |||
| 1007 | 75 aa hypothetical protein | |||
| 1008 | 86 aa hypothetical protein | |||
| 1009 | 87 aa hypothetical protein | |||
| 1009 | 59 aa hypothetical protein | |||
| 1010 | PIN domain-containing protein | |||
| 1011 | 68 aa hypothetical protein | |||
| 1012 | R | TspPSB1VIIIP (100% identity) | Mme286ORFMP | |
| 1016 | 230 aa hypothetical protein N838_22725 | |||
| 958 | 68 aa hypothetical protein | |||
| 959 | M | M1.DspSRB1II (100% identity) | CCCNNNNNNTGCG | M1.Mme286ORFQP |
| 962 | GxxExxY protein | |||
| 964 | M | M2.DspSRB1II (100% identity) | CCCNNNNNNTGCG | M2.Mme286ORFQP |
| 967 | S | S.DspSRB1II (100% identity) | CCCNNNNNNTGCG | S.Mme286ORFQP |
| 968 | 310 aa hypothetical protein | |||
| 969 | DNA binding domain-containing protein | |||
| 970 | 206 aa hypothetical protein | |||
| 971 | R | DspSRB1IIP (100% identity) | CCCNNNNNNTGCG | Mme286ORFQP |
| 975 | 60 aa hypothetical protein | |||
| 1950 | 71 aa hypothetical protein N838_19505 | |||
| 1952 | M | M.TspPSB1X (100% identity) | GAGNNNNNNAATC | M.Mme286ORFQ1P |
| 1955 | 282 aa hypothetical protein N838_19495 | |||
| 1956 | Uncharacterised protein | |||
| 1955 | 154 aa hypothetical protein N838_19490 | |||
| 1957 | 170 aa hypothetical protein | |||
| 1958 | 179 aa hypothetical protein | |||
| 1959 | 141 aa hypothetical protein | |||
| 1959 | 134 aa hypothetical protein N838_19485 | |||
| 1962 | S | S.TspPSB1X (100% identity) | GAGNNNNNNAATC | S.Mme286ORFQ1P |
| 1965 | R | TspPSB1XP (90% identity) | GAGNNNNNNAATC | Mme286ORFQ1P |
| 1967 | 109 aa hypothetical protein | |||
| 2194 | 579 aa hypothetical protein | |||
| 2200 | S | S.RspA2ORFHP (100% identity) | S.Mme286ORFKP | |
| 2205 | DUF86 domain-containing protein | |||
| 2206 | DNA polymerase III subunit beta | |||
| 2207 | 152 aa hypothetical protein | |||
| 2208 | transposase | |||
| 2209 | 220 aa hypothetical protein ROTAS13_04713 | |||
| 2209 | 66 aa hypothetical protein | |||
| 2210 | Transposase | |||
| 2210 | 112 aa hypothetical protein | |||
| 2211 | 533 aa hypothetical protein ROA7023_04698 | |||
| 2210 | IS21 family transposase | |||
| 2211 | 140 aa hypothetical protein ROA7023_04698 | |||
| 2212 | M | M.RspA2ORFPP (100% identity) | M.Mme286ORFKP | |
| 2216 | 244 aa hypothetical protein | |||
| 2216 | 67 aa hypothetical protein | |||
| 2218 | R | RspA2ORFPP (100% identity) | Mme286ORFKP | |
| 2223 | 103 aa hypothetical protein | |||
| 8647 | 81 aa hypothetical protein N838_09360 | |||
| 8649 | M | M.TspPSB1VII (96% identity) | GTGANNNNNNTGC | M.Mme286ORFO1P |
| 8653 | S | S.TspPSB1VII (100% identity) | GTGANNNNNNTGC | S.Mme286ORFO1P |
| 8660 | R | TspPSB1VIIP (74% identity) | GTGANNNNNNTGC | Mme286ORFO1P |
| 8665 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | TspPSB1IXP (100% identity) | CCTNAGG | Mme286ORFFP |
| 7 | Bpu10I family restriction endonuclease | |||
| 8 | M | M.TspPSB1IX (100% identity) | CCTNAGG | M.Mme286ORFFP |
| 9 | 87 aa hypothetical protein | |||
| 5 | 264 aa hypothetical protein EDC22_10226 | |||
| ??? | M | M.RbaPBA2bORF5150P (85% identity) | M.Mme286ORFB1P | |
| 13 | 73 aa hypothetical protein | |||
| 2 | 1270 aa hypothetical protein N839_00915 | |||
| 11 | R | DspSRB1ORF15025P (88% identity) | Mme286ORFRP | |
| 12 | M | M.DspSRB1ORF15025P (98% identity) | M.Mme286ORFRP | |
| 14 | 77 aa hypothetical protein | |||
| 15 | aspartate--tRNA ligase | |||
| ??? | R | MspALG8ORF5670P (70% identity) | Mme286ORFGP | |
| 20 | M | M.RspA2ORFCP (96% identity) | M.Mme286ORFGP | |
| 23 | 217 aa hypothetical protein | |||
| 8 | acetyl-CoA carboxylase carboxyl transferase subunit alpha | |||
| 10 | M | M.MspA3ORFAP (100% identity) | M.Mme286ORFW1P | |
| 11 | basic proline-rich protein-like, partial | |||
| 21 | 115 aa hypothetical protein | |||
| 22 | R | OspA1IIIP (100% identity) | Mme286ORFE2P | |
| 23 | S-adenosylmethionine-binding protein | |||
| 22 | restriction endonuclease | |||
| 23 | M | M.OspA1III (100% identity) | M.Mme286ORFF2P | |
| 25 | DGQHR domain-containing protein | |||
| 34 | 63 aa hypothetical protein | |||
| 35 | M | M.TspPSB1IV (95% identity) | AGGCCT | M.Mme286ORFS1P |
| 40 | 251 aa hypothetical protein | |||
| 47 | HNH endonuclease | |||
| 50 | M | M.RspA2ORFGP (100% identity) | M.Mme286ORFK2P | |
| 52 | 210 aa hypothetical protein ROTO_27450 | |||
| 50 | Primase C terminal 2 | |||
| 52 | M | M.RspA2ORFFP (100% identity) | M.Mme286ORFM2P | |
| 55 | 96 aa hypothetical protein ROTO_27450 | |||
| 64 | IS66 family transposase | |||
| 67 | M | M.TspPSB1ORF24425P (100% identity) | M.Mme286ORFH2P | |
| 69 | 106 aa hypothetical protein | |||
| 94 | 125 aa hypothetical protein | |||
| 98 | M | M.RbaPBA2bORF5150P (93% identity) | M.Mme286ORFY1P | |
| 99 | 73 aa hypothetical protein | |||
| 100 | 87 aa hypothetical protein | |||
| 101 | M | M.TspPSB1ORF9210P (100% identity) | M.Mme286ORFTAP | |
| 102 | IS4 family transposase | |||
| 104 | M | M.TspPSB1ORF9220P (95% identity) | M.Mme286ORFTBP | |
| 108 | 115 aa hypothetical protein | |||
| 88 | 163 aa hypothetical protein | |||
| 92 | M | M.OspA1ORF7295P (100% identity) | M.Mme286ORFZ1P | |
| 94 | 70 aa hypothetical protein | |||
| 113 | recombinase zinc beta ribbon domain-containing protein | |||
| 115 | RM | RspA2ORFIP (100% identity) | Mme286ORFI2P | |
| 119 | 793 aa hypothetical protein A9Q95_07015 | |||
| 144 | 62 aa hypothetical protein EOP35_03920 | |||
| 146 | R | DspSRB1ORF12075P (95% identity) | Mme286ORFK1P | |
| 148 | M | M.DspSRB1ORF12075P (100% identity) | M.Mme286ORFK1P | |
| 149 | V | V.DspSRB1ORF12075P (88% identity) | V.Mme286ORFK1P | |
| 151 | 86 aa hypothetical protein | |||
| 190 | NERD domain-containing protein | |||
| 194 | M | M.RspA2ORFBP (100% identity) | M.Mme286ORFV1P | |
| 195 | V | V.RspA2ORFBP (67% identity) | V.Mme286ORFV1P | |
| 197 | 179 aa hypothetical protein | |||
| 258 | 1243 aa hypothetical protein Noc_0056 | |||
| 264 | M | M.DspSRB1ORF11575P (99% identity) | M.Mme286ORFPP | |
| 267 | 115 aa hypothetical protein | |||
| 323 | 89 aa hypothetical protein | |||
| 325 | M | M.RspA2ORFRP (100% identity) | M.Mme286ORFC2P | |
| 328 | V | V.RspA2ORFRP (100% identity) | V.Mme286ORFC2P | |
| 330 | restriction endonuclease | |||
| 335 | glycosyltransferase, partial | |||
| 337 | M | M.TspPSB1ORF8625P (100% identity) | M.Mme286ORFJ2P | |
| 340 | 72 aa hypothetical protein | |||
| 300 | 115 aa hypothetical protein | |||
| ??? | M | M1.RspA2ORFC1P (81% identity) | M.Mme286ORFD1P | |
| 312 | 109 aa hypothetical protein | |||
| 307 | 138 aa hypothetical protein | |||
| ??? | M | M2.RspA2ORFC1P (97% identity) | M.Mme286ORFC1P | |
| 319 | 80 aa hypothetical protein | |||
| 289 | 70 aa hypothetical protein | |||
| 291 | RM | DspSRB1ORF22425P (87% identity) | Mme286ORFIP | |
| 294 | 177 aa hypothetical protein | |||
| 310 | GNAT family N-acetyltransferase | |||
| 312 | M | M.RspA2I (100% identity) | GANTC | M.Mme286ORFB2P |
| 314 | 169 aa hypothetical protein | |||
| 640 | 76 aa hypothetical protein | |||
| 642 | M | M.TspPSB1I (96% identity) | AAGCTT | M.Mme286ORFD2P |
| 643 | YihY/virulence factor BrkB family protein | |||
| 652 | 123 aa hypothetical protein | |||
| 655 | M | M.RspA2ORFCP (100% identity) | M.Mme286ORFG2P | |
| 658 | 217 aa hypothetical protein | |||
| 760 | divergent AAA domain protein | |||
| 763 | M | M.DspSRB1ORF13810P (98% identity) | M.Mme286ORFN1P | |
| 766 | GxxExxY protein | |||
| 1009 | 112 aa hypothetical protein | |||
| 1010 | R | TspPSB1IIP (100% identity) | Mme286ORFX1P | |
| 1011 | M | M.TspPSB1II (84% identity) | M.Mme286ORFX1P | |
| 1012 | pilus biosynthesis protein HicB, partial | |||
| 1231 | 186 aa hypothetical protein | |||
| 1234 | RM | TspPSB1ORF7540P (100% identity) | Mme286ORFI1P | |
| 1240 | 225 aa hypothetical protein | |||
| 1285 | helicase | |||
| 1292 | RM | TspPSB1ORF7480P (100% identity) | Mme286ORFH1P | |
| 1299 | DUF3800 domain-containing protein | |||
| 1429 | 63 aa hypothetical protein | |||
| 1430 | M | M.TspPSB1IV (100% identity) | AGGCCT | M.Mme286ORFT1P |
| 1435 | 75 aa hypothetical protein | |||
| 1492 | DNA binding domain protein, excisionase family | |||
| 1494 | M | M.DspSRB1I (100% identity) | CTGCAG | M.Mme286ORFJ1P |
| 1498 | R | DspSRB1IP (100% identity) | CTGCAG | Mme286ORFJ1P |
| 1499 | 103 aa hypothetical protein | |||
| 1871 | 194 aa hypothetical protein | |||
| 1873 | M | M1.RspA2ORFXP (100% identity) | M.Mme286ORFE1P | |
| 1876 | Primase C terminal 2 | |||
| 1874 | 374 aa hypothetical protein FD175_2295 | |||
| ??? | M | M2.RspA2ORFXP (100% identity) | M.Mme286ORFHP | |
| 1880 | transposase | |||
| 1921 | 122 aa hypothetical protein | |||
| ??? | M | M.Mme286ORFY1P (64% identity) | M.Mme286ORFOP | |
| 1927 | 155 aa hypothetical protein | |||
| 1926 | Primase C terminal 2 | |||
| ??? | M | M.RbaPBA2aORF18255P (87% identity) | M.Mme286ORFNP | |
| 1936 | 78 aa hypothetical protein | |||
| 2114 | DEAD/DEAH box helicase family protein | |||
| 2121 | RM | RspA2ORFMP (100% identity) | Mme286ORFBP | |
| 2129 | 115 aa hypothetical protein | |||
| 2203 | 115 aa hypothetical protein | |||
| 2206 | M | M1.RspA2ORFJP (100% identity) | M.Mme286ORFL2P | |
| 2212 | DNA modification methylase | |||
| 2206 | DNA cytosine methyltransferase | |||
| 2212 | M | M.TspPSB1ORF8625P (100% identity) | M.Mme286ORFJ2P | |
| 2215 | 186 aa hypothetical protein | |||
| 2510 | 65 aa hypothetical protein | |||
| ??? | M | M.TspPSB1ORF6040P (97% identity) | M.Mme286ORFDP | |
| 2518 | IS66 family transposase | |||
| 2973 | 81 aa hypothetical protein | |||
| ??? | M | M.Mme286ORFCP (96% identity) | M.Mme286ORFEP | |
| 2978 | 61 aa hypothetical protein | |||
| 3793 | 99 aa hypothetical protein | |||
| 3795 | M | M.TspPSB1ORF4430P (87% identity) | M.Mme286ORFAP | |
| 3800 | 238 aa hypothetical protein | |||
| 4790 | 262 aa hypothetical protein, partial | |||
| 4792 | M | M.TspPSB1V (100% identity) | CTCGAG | M.Mme286ORFU1P |
| 4794 | R | TspPSB1VP (100% identity) | CTCGAG | Mme286ORFU1P |
| 4797 | 60 aa hypothetical protein | |||
| 5759 | 270 aa hypothetical protein COB30_01935 | |||
| 5761 | M | M.TspPSB1III (100% identity) | GGATCC | M.Mme286ORFA2P |
| 5763 | R | TspPSB1IIIP (72% identity) | GGATCC | Mme286ORFA2P |
| 5765 | 278 aa hypothetical protein | |||
| 11024 | 81 aa hypothetical protein | |||
| ??? | M | M.TspPSB1ORF28760P (82% identity) | M.Mme286ORFCP | |
| 11029 | 106 aa hypothetical protein | |||
| 11806 | 231 aa hypothetical protein | |||
| 11807 | R | TspPSB1IXP (100% identity) | CCTNAGG | Mme286ORFFP |
| 11809 | M | M.TspPSB1IX (100% identity) | CCTNAGG | M.Mme286ORFFP |
| 11810 | 87 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 304 | 91 aa hypothetical protein | |||
| 306 | R | TspPSB1ORF22745P (91% identity) | Mme286ORFP1P | |
| 312 | 107 aa hypothetical protein | |||
| 315 | M | M.TspPSB1ORF22745P (100% identity) | M.Mme286ORFP1P | |
| 320 | 233 aa hypothetical protein | |||
| 393 | 115 aa hypothetical protein | |||
| 398 | M | M.RbaPBA2aORF12670P (44% identity) | M.Mme286ORFWP | |
| 406 | 234 aa hypothetical protein BN2475_1140009 | |||
| 440 | 208 aa hypothetical protein | |||
| 441 | R | DspSRB1ORF5575P (90% identity) | Mme286ORFM1P | |
| 447 | 143 aa hypothetical protein | |||
| 448 | AAA family ATPase | |||
| 448 | 101 aa hypothetical protein | |||
| 450 | M | M.DspSRB1ORF5575P (100% identity) | M.Mme286ORFM1P | |
| 455 | 141 aa hypothetical protein | |||
| 1265 | type II toxin-antitoxin system Phd/YefM family antitoxin | |||
| 1268 | R | DspSRB1ORF12970P (100% identity) | Mme286ORFL1P | |
| 1272 | 114 aa hypothetical protein HRbin08_01746 | |||
| 1273 | 119 aa hypothetical protein | |||
| 1272 | 62 aa hypothetical protein | |||
| 1276 | M | M.DspSRB1ORF12970P (94% identity) | M.Mme286ORFL1P | |
| 1280 | 63 aa hypothetical protein | |||
| 1493 | 67 aa hypothetical protein | |||
| 1496 | M | M.RspA2ORFOP (100% identity) | M.Mme286ORFLP | |
| 1498 | transposase | |||
| 9364 | 153 aa hypothetical protein N838_29450 | |||
| 9366 | M | M.TspPSB1ORF30940P (100% identity) | M.Mme286ORFG1P | |
| 9371 | 160 aa hypothetical protein | |||
| 9372 | zeta toxin family protein | |||
| 9370 | 200 aa hypothetical protein | |||
| 9373 | transcriptional regulator | |||
| 9373 | 118 aa hypothetical protein | |||
| 9370 | 130 aa hypothetical protein | |||
| 9370 | 131 aa hypothetical protein | |||
| 9375 | R | TspPSB1ORF30940P (100% identity) | Mme286ORFG1P | |
| 9376 | 144 aa hypothetical protein | |||
| 9400 | 67 aa hypothetical protein | |||
| 9402 | M | M.TspPSB1ORF30880P (100% identity) | M.Mme286ORFF1P | |
| 9407 | 183 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 46 | DUF488 domain-containing protein | |||
| 48 | R | RspA2McrBP (100% identity) | Mme286McrBP | |
| 55 | R | RspA2McrCP (100% identity) | Mme286McrCP | |
| 59 | 93 aa hypothetical protein Lal_00046490 | |||
| 2230 | methyltransferase domain-containing protein | |||
| 2233 | R | TspPSB1ORF6340P (84% identity) | Mme286ORFSP | |
| 2240 | 159 aa hypothetical protein N838_14225 | |||
| 7135 | 123 aa hypothetical protein | |||
| 7137 | R | TspPSB1MrrP (100% identity) | Mme286MrrP | |
| 7140 | 105 aa hypothetical protein | |||