Clostridioides difficile DSM 105001 |
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Putative Clostridioides difficile DSM 105001 RM systems
Ref: Schwanbeck,J. et al. J. Antimicrob. Chemother. 74 (1), 6-10 (2019)
REBASE ref # 31148
Complete sequence: 4,198,599 bp
GenBank #: CP028361
REBASE acronym: Cdi105001
Org_num: 44297
All begin DSM105001_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3295 | 687 aa hypothetical protein | |||
| 3296 | R | Cdi1528ORF3155P (100% identity) | TAGNNNNNRTGAA | Cdi105001ORF3301P |
| 3297 | 142 aa hypothetical protein | |||
| 3298 | DNA polymerase subunit beta | |||
| 3299 | 102 aa hypothetical protein | |||
| 3300 | S | S.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | S.Cdi105001ORF3301P |
| 3301 | M | M.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | M.Cdi105001ORF3301P |
| 3302 | tagatose-bisphosphate aldolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1131 | 82 aa hypothetical protein | |||
| 1132 | M | M.CdiRT010ORF11280P (100% identity) | M.Cdi105001ORF1132P | |
| 1133 | 76 aa hypothetical protein | |||
| 1687 | 39 aa hypothetical protein | |||
| 1688 | M | M.CdiS0352ORF4245P (100% identity) | M.Cdi105001ORF1688P | |
| 1689 | 65 aa hypothetical protein | |||
| 3036 | phospholipase | |||
| 3037 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi105001ORF3037P |
| 3038 | badm/rrf2 family transcriptional regulator | |||
| 3375 | 33 aa hypothetical protein | |||
| 3376 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.Cdi105001ORF3376P |
| 3377 | 872 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2293 | sigma-54-dependent transcriptional regulator | |||
| 2294 | R | Pdi30McrCP (100% identity) | Cdi105001McrCP | |
| 2295 | R | Pdi30McrBP (100% identity) | Cdi105001McrBP | |
| 2296 | cell division protein FtsZ | |||