Citrobacter freundii N18-04078 |
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Putative Citrobacter freundii N18-04078 RM systems
Ref: Gobeille Pare,S. et al. J. Antimicrob. Chemother. (2020) In press
REBASE ref # 31103
| Sequence length: | GenBank #: | |
| Chromosome: | 5,216,668 bp | CP047273 |
| plasmid pCf4078: | 277,055 bp | CP047274 |
REBASE acronym: Cfr4078
Org_num: 44140
All begin F3085_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 395 | serine/threonine protein kinase | |||
| 400 | M | M.Cfr4128ORF400P (100% identity) | M.Cfr4078ORF400P | |
| 405 | S | S.Cfr4128ORF400P (100% identity) | S.Cfr4078ORF400P | |
| 410 | DUF4268 domain-containing protein | |||
| 415 | R | Cfr4128ORF400P (100% identity) | Cfr4078ORF400P | |
| 420 | 479 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1885 | cell division protein DamX | |||
| 1890 | M | M.Eco5172DamP (100% identity) | GATC | M.Cfr4078DamP |
| 1895 | ribulose-phosphate 3-epimerase | |||
| 2430 | DUF2556 domain-containing protein | |||
| 2435 | M | M.Eco5172ORF4078P (100% identity) | ATGCAT | M.Cfr4078ORF2435P |
| 2440 | tyrosine-type recombinase/integrase | |||
| 9655 | phosphohydrolase | |||
| 9660 | M | M.CspSL156ORF9755P (100% identity) | CCWGG | M.Cfr4078ORF9660P |
| 9665 | V | V.CyoL6ORF9385P (100% identity) | V.Cfr4078ORF9660P | |
| 9670 | drug/metabolite exporter YedA | |||
| 10200 | GntR family transcriptional regulator | |||
| ??? | M | M.Cfr4128ORF10405P (100% identity) | M.Cfr4078ORF10205P | |
| 10210 | 72 aa hypothetical protein | |||
| 20140 | DUF1317 family protein | |||
| ??? | M | M.Cfr4128ORF20310P (100% identity) | M.Cfr4078ORF20145P | |
| 20150 | DUF4060 family protein | |||
| 21860 | HNH endonuclease | |||
| 21865 | R | CspSL156ORF21620P (100% identity) | Cfr4078ORF21865P | |
| 21870 | 280 aa hypothetical protein | |||
| 23345 | RusA family crossover junction | |||
| 23350 | M | M.Cfr4128ORF23310P (100% identity) | M.Cfr4078ORF23350P | |
| 23355 | GntR family transcriptional regulator | |||
| plasmid pCf4078 | ||||
| 26485 | AAA family ATPase | |||
| ??? | M | M.Kpn3892ORF26955P (100% identity) | CCWGG | M.Cfr4078ORF26490P |
| 26495 | R | Kpn9645ORFAP (100% identity) | CCWGG | Cfr4078ORF26490P |
| 26500 | tyrosine-type recombinase/integrase | |||
| 26520 | DNA breaking-rejoining protein | |||
| 26525 | M | M.Kpni11ayORF5166P (100% identity) | M.Cfr4078ORF26525P | |
| 26530 | 73 aa hypothetical protein | |||