Escherichia coli RHB01-C23 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli RHB01-C23 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,138,962 bp | CP058080 |
| plasmid pRHB01-C23_2: | 90,645 bp | CP058081 |
| plasmid pRHB01-C23_3: | 74,290 bp | CP058082 |
REBASE acronym: Eco1C23
Org_num: 44065
All begin HVV41_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12050 | 428 aa hypothetical protein | |||
| 12055 | S | S.SflN101ORF11895P (100% identity) | TGANNNNNNTCCA | S.Eco1C23ORF12060P |
| 12060 | M | M.SflN101ORF11895P (100% identity) | TGANNNNNNTCCA | M.Eco1C23ORF12060P |
| 12065 | 128 aa hypothetical protein | |||
| 12275 | endoribonuclease SymE | |||
| 12280 | S | S.SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | S.Eco1C23ORF12285P |
| 12285 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.Eco1C23ORF12285P |
| 12290 | R | SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | Eco1C23ORF12285P |
| 12295 | 322 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 820 | phosphohydrolase | |||
| 825 | M | M.SdyFF10DcmP (100% identity) | CCWGG | M.Eco1C23DcmP |
| 830 | V | V.SsoSE61DcmP (100% identity) | V.Eco1C23DcmP | |
| 835 | drug/metabolite exporter YedA | |||
| 6495 | DUF1883 domain-containing protein | |||
| 6500 | M | M.Lsp2021ORF20390P (100% identity) | M.Eco1C23ORF6500P | |
| 6505 | TrmB family transcriptional regulator | |||
| 7435 | replication endonuclease | |||
| 7440 | M | M.Eco1C18ORF7440P (100% identity) | GATC | M.Eco1C23ORF7440P |
| 7445 | TraR/DksA family transcriptional regulator | |||
| 10530 | LexA family transcriptional regulator | |||
| 10535 | M | M.EcoST05ORF2750P (100% identity) | GATC | M.Eco1C23ORF10535P |
| 10540 | PerC family transcriptional regulator | |||
| 12075 | AAA family ATPase | |||
| 12080 | R | SflN101ORF11875P (100% identity) | Eco1C23ORF12080P | |
| 12085 | HNH endonuclease | |||
| 12545 | PerC family transcriptional regulator | |||
| 12550 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco1C23ORF12550P |
| 12555 | LexA family transcriptional regulator | |||
| 15195 | 329 aa hypothetical protein | |||
| 15200 | M | M.SflFF38ORF15P (100% identity) | M.Eco1C23ORF15P | |
| 15205 | replication endonuclease | |||
| 18150 | cell division protein DamX | |||
| 18155 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco1C23DamP |
| 18160 | ribulose-phosphate 3-epimerase | |||
| 18680 | DUF2556 family protein | |||
| 18685 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco1C23ORF18685P |
| 18690 | DNA-binding transcriptional regulator Fis | |||
| 19755 | ATP-binding protein | |||
| 19760 | M | M.Ecos195ORF4155P (100% identity) | M.Eco1C23ORF19760P | |
| 19765 | TIGR02646 family protein | |||
| plasmid pRHB01-C23_2 | ||||
| 25520 | 73 aa hypothetical protein | |||
| 25525 | M | M.EcoWY5172ORF23370P (100% identity) | M.Eco1C23ORF25525P | |
| 25530 | 103 aa hypothetical protein | |||
| plasmid pRHB01-C23_3 | ||||
| 25725 | 103 aa hypothetical protein | |||
| 25730 | M | M.EcoWY5172ORF23370P (100% identity) | M.Eco1C23ORF25730P | |
| 25735 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12065 | 128 aa hypothetical protein | |||
| 12070 | R | SflN101McrCP (100% identity) | Eco1C23McrCP | |
| 12075 | R | SflN101McrBP (100% identity) | Eco1C23McrBP | |
| 12080 | HNH endonuclease | |||
| 12260 | DUF1127 domain-containing protein | |||
| 12265 | R | SflLIN8GmrSDP (42% identity) | Eco1C23GmrSP | |
| 12270 | R | Ecos673GmrDP (100% identity) | Eco1C23GmrDP | |
| 12275 | endoribonuclease SymE | |||