Escherichia coli RHB01-C17 |
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Putative Escherichia coli RHB01-C17 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,127,691 bp | CP058090 |
| plasmid pRHB01-C17_2: | 90,645 bp | CP058091 |
| plasmid pRHB01-C17_3: | 74,290 bp | CP058092 |
REBASE acronym: Eco1C17
Org_num: 44062
All begin HVV37_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12040 | 428 aa hypothetical protein | |||
| 12045 | S | S.SflN101ORF11895P (100% identity) | TGANNNNNNTCCA | S.Eco1C17ORF12050P |
| 12050 | M | M.SflN101ORF11895P (100% identity) | TGANNNNNNTCCA | M.Eco1C17ORF12050P |
| 12055 | 128 aa hypothetical protein | |||
| 12265 | endoribonuclease SymE | |||
| 12270 | S | S.SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | S.Eco1C17ORF12275P |
| 12275 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.Eco1C17ORF12275P |
| 12280 | R | SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | Eco1C17ORF12275P |
| 12285 | 322 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 820 | phosphohydrolase | |||
| 825 | M | M.SdyFF10DcmP (100% identity) | CCWGG | M.Eco1C17DcmP |
| 830 | V | V.SsoSE61DcmP (100% identity) | V.Eco1C17DcmP | |
| 835 | drug/metabolite exporter YedA | |||
| 6495 | DUF1883 domain-containing protein | |||
| 6500 | M | M.Lsp2021ORF20390P (100% identity) | M.Eco1C17ORF6500P | |
| 6505 | TrmB family transcriptional regulator | |||
| 7425 | replication endonuclease | |||
| 7430 | M | M.Eco1C23ORF7440P (100% identity) | GATC | M.Eco1C17ORF7430P |
| 7435 | TraR/DksA family transcriptional regulator | |||
| 10520 | LexA family transcriptional regulator | |||
| 10525 | M | M.EcoST05ORF2750P (100% identity) | GATC | M.Eco1C17ORF10525P |
| 10530 | PerC family transcriptional regulator | |||
| 12065 | AAA family ATPase | |||
| 12070 | R | SflN101ORF11875P (100% identity) | Eco1C17ORF12070P | |
| 12075 | HNH endonuclease | |||
| 12535 | PerC family transcriptional regulator | |||
| 12540 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco1C17ORF12540P |
| 12545 | LexA family transcriptional regulator | |||
| 15190 | 329 aa hypothetical protein | |||
| 15195 | M | M.SflFF38ORF15P (100% identity) | M.Eco1C17ORF15P | |
| 15200 | replication endonuclease | |||
| 18085 | cell division protein DamX | |||
| 18090 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco1C17DamP |
| 18095 | ribulose-phosphate 3-epimerase | |||
| 18615 | DUF2556 family protein | |||
| 18620 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco1C17ORF18620P |
| 18625 | DNA-binding transcriptional regulator Fis | |||
| 19690 | ATP-binding protein | |||
| 19695 | M | M.Ecos195ORF4155P (100% identity) | M.Eco1C17ORF19695P | |
| 19700 | TIGR02646 family protein | |||
| plasmid pRHB01-C17_2 | ||||
| 25465 | 73 aa hypothetical protein | |||
| 25470 | M | M.EcoWY5172ORF23370P (100% identity) | M.Eco1C17ORF25470P | |
| 25475 | 103 aa hypothetical protein | |||
| plasmid pRHB01-C17_3 | ||||
| 25670 | 103 aa hypothetical protein | |||
| 25675 | M | M.EcoWY5172ORF23370P (100% identity) | M.Eco1C17ORF25675P | |
| 25680 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12055 | 128 aa hypothetical protein | |||
| 12060 | R | SflN101McrCP (100% identity) | Eco1C17McrCP | |
| 12065 | R | SflN101McrBP (100% identity) | Eco1C17McrBP | |
| 12070 | HNH endonuclease | |||
| 12250 | DUF1127 domain-containing protein | |||
| 12255 | R | SflLIN8GmrSDP (42% identity) | Eco1C17GmrSP | |
| 12260 | R | Ecos673GmrDP (100% identity) | Eco1C17GmrDP | |
| 12265 | endoribonuclease SymE | |||