Escherichia coli MOD1-ECOR24 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli MOD1-ECOR24 RM systems
Ref: Patel,I.R. et al. Microbiol Resour Announc 7 (14), e01133-18 (2018)
REBASE ref # 28427
Contig set: 5,227,547 bp
GenBank #: QOXJ00000000 (NZ_QOXJ00000000)
REBASE acronym: EcoR24
Org_num: 1241
All begin APT25_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 25840 | EF-P beta-lysylation protein EpmB | |||
| 25845 | M | M.Sen8497ORF2259P (100% identity) | M.EcoR24ORF25845P | |
| 25850 | Rpn family recombination-promoting | |||
| 23035 | increased serum survival lipoprotein Iss | |||
| 23040 | S | S.EcoRM9088ORF3290P (29% identity) | S.EcoR24ORF23045P | |
| 23045 | M | M.EcoRM9088ORF3290P (99% identity) | M.EcoR24ORF23045P | |
| 23050 | R | EcoRM9088ORF3290P (100% identity) | EcoR24ORF23045P | |
| 23055 | 267 aa hypothetical protein | |||
| 5180 | restriction endonuclease | |||
| 5185 | R | Msa17ORFC2P (98% identity) | AACNNNNNNGTGC | EcoR24IP |
| 5190 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoR24IP |
| 5195 | S | S.SenHNK130ORF17125P (99% identity) | AACNNNNNNGTGC | S.EcoR24I |
| 5200 | endoribonuclease SymE | |||
| 5455 | DUF4942 domain-containing protein | |||
| 5460 | M | M.EcoSCU103ORF3030P (100% identity) | RTCANNNNNNCTC | M.EcoR24ORF5460P |
| 5465 | S | S.EcoSCU103ORF3030P (100% identity) | RTCANNNNNNCTC | S.EcoR24ORF5460P |
| 5470 | R | EcoSCU103ORF3030P (99% identity) | RTCANNNNNNCTC | EcoR24ORF5460P |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 26360 | drug/metabolite exporter YedA | |||
| 26365 | V | V.SflSTLE3DcmP (100% identity) | V.EcoR24DcmP | |
| 26370 | M | M.EcoSMBLDcmP (99% identity) | CCWGG | M.EcoR24DcmP |
| 26375 | HD domain-containing protein | |||
| 23960 | TrmB family transcriptional regulator | |||
| 23965 | M | M.SsoL4094ORF17545P (99% identity) | A | M.EcoR24ORF23965P |
| 23980 | DUF3927 domain-containing protein | |||
| 17425 | 73 aa hypothetical protein | |||
| 17430 | M | M.Sso866ORF27155P (76% identity) | M.EcoR24ORF17430P | |
| 17435 | aminoglycoside O-phosphotransferase APH(6)-Id | |||
| 13935 | protein DamX | |||
| 13940 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoR24DamP |
| 13945 | ribulose-phosphate 3-epimerase | |||
| 8960 | PerC family transcriptional regulator | |||
| 8965 | M | M.EcosEC8ORF20220P (99% identity) | GATC | M.EcoR24ORF8965P |
| 8970 | LexA family transcriptional regulator | |||
| 7235 | Fis family transcriptional regulator | |||
| 7240 | M | M.Ssp28760ORF20045P (99% identity) | ATGCAT | M.EcoR24ORF7240P |
| 7245 | DUF2556 domain-containing protein | |||
| 5435 | HNH endonuclease | |||
| 5440 | R | EcoSCU103ORF3050P (99% identity) | EcoR24ORF5440P | |
| 5445 | restriction endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5175 | GTPase | |||
| 5180 | R | SenHNK130MrrP (99% identity) | EcoR24MrrP | |
| 5185 | type I restriction-modification system | |||
| 5200 | endoribonuclease SymE | |||
| 5205 | R | SenHNK130McrBP (100% identity) | EcoR24McrB2P | |
| 5210 | R | SenHNK130McrCP (99% identity) | EcoR24McrC2P | |
| 5440 | HNH endonuclease | |||
| 5445 | R | SflSTLE4McrCP (99% identity) | EcoR24McrCP | |
| 5450 | R | SflSTLE4McrBP (100% identity) | EcoR24McrBP | |
| 5455 | DUF4942 domain-containing protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12615 | DUF4406 domain-containing protein | |||
| 12620 | M | M.EcoTob1ORF20500P (100% identity) | M.EcoR24ORF12620P | |
| 12625 | 75 aa hypothetical protein | |||