Escherichia coli RHB06-C09 |
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Putative Escherichia coli RHB06-C09 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,749,889 bp | CP055976 |
| plasmid pRHB06-C09_2: | 140,434 bp | CP055977 |
| plasmid pRHB06-C09_3: | 66,037 bp | CP055978 |
REBASE acronym: Eco06C09
Org_num: 43627
All begin HVV96_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20975 | 322 aa hypothetical protein | |||
| 20980 | R | SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | Eco06C09ORF20985P |
| 20985 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.Eco06C09ORF20985P |
| 20990 | S | S.SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | S.Eco06C09ORF20985P |
| 20995 | endoribonuclease SymE | |||
| 21205 | 128 aa hypothetical protein | |||
| 21210 | M | M.EcohubtORF19935P (99% identity) | TGANNNNNNTCCA | M.Eco06C09ORF21210P |
| 21215 | S | S.SflN101ORF11895P (100% identity) | TGANNNNNNTCCA | S.Eco06C09ORF21210P |
| 21220 | 428 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3055 | cell division protein DamX | |||
| 3060 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco06C09DamP |
| 3065 | ribulose-phosphate 3-epimerase | |||
| 3585 | DUF2556 family protein | |||
| 3590 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco06C09ORF3590P |
| 3595 | DNA-binding transcriptional regulator Fis | |||
| 10425 | TrmB family transcriptional regulator | |||
| 10430 | M | M.Eco42C22ORF1045P (100% identity) | M.Eco06C09ORF10430P | |
| 10440 | holin | |||
| 10685 | phosphohydrolase | |||
| 10690 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco06C09DcmP |
| 10695 | V | V.SflFF64DcmP (100% identity) | V.Eco06C09DcmP | |
| 10700 | drug/metabolite exporter YedA | |||
| 21185 | HNH endonuclease | |||
| 21190 | R | SflN101ORF11875P (100% identity) | Eco06C09ORF21190P | |
| 21195 | AAA family ATPase | |||
| plasmid pRHB06-C09_2 | ||||
| 23445 | 73 aa hypothetical protein | |||
| 23450 | M | M.EcoWY5172ORF23370P (100% identity) | M.Eco06C09ORF23450P | |
| 23455 | 103 aa hypothetical protein | |||
| plasmid pRHB06-C09_3 | ||||
| 23640 | 101 aa hypothetical protein | |||
| 23645 | M | M.Kpn1026ORFJP (100% identity) | M.Eco06C09ORF23645P | |
| 23650 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20995 | endoribonuclease SymE | |||
| ??? | R | EcoW122GmrDP (100% identity) | Eco06C09GmrDP | |
| 21005 | R | SflN101GmrSP (100% identity) | Eco06C09GmrSP | |
| 21010 | DUF1127 domain-containing protein | |||
| 21190 | HNH endonuclease | |||
| 21195 | R | EcoSMBLMcrBP (100% identity) | Eco06C09McrBP | |
| 21200 | R | Ecows53McrCP (100% identity) | Eco06C09McrCP | |
| 21205 | 128 aa hypothetical protein | |||