Escherichia coli RHB40-C12 |
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Putative Escherichia coli RHB40-C12 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,959,135 bp | CP055941 |
| plasmid pRHB40-C12_2: | 228,935 bp | CP055942 |
| plasmid pRHB40-C12_3: | 59,996 bp | CP055943 |
| plasmid pRHB40-C12_4: | 6,716 bp | CP055944 |
REBASE acronym: Eco40C12
Org_num: 43635
All begin HVZ99_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5940 | restriction endonuclease | |||
| 5945 | M | M.SflSTLE3ORF19325P (100% identity) | M.Eco40C12ORF5945P | |
| 5950 | S | S.SflSTLE3ORF19325P (100% identity) | S.Eco40C12ORF5945P | |
| 5955 | R | SflSTLE3ORF19325P (99% identity) | Eco40C12ORF5945P | |
| 5960 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1285 | replication endonuclease | |||
| 1290 | M | M.SspS13ORF8710P (100% identity) | GATC | M.Eco40C12ORF1290P |
| 1295 | TraR/DksA family transcriptional regulator | |||
| 4245 | tellurite/colicin resistance protein | |||
| 4265 | M | M.EcoG089ORF1610P (100% identity) | M.Eco40C12ORF4265P | |
| 4270 | 67 aa hypothetical protein | |||
| 10850 | cell division protein DamX | |||
| 10855 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco40C12DamP |
| 10860 | ribulose-phosphate 3-epimerase | |||
| 11475 | DUF2556 family protein | |||
| 11480 | M | M.SspS13ORF21055P (99% identity) | ATGCAT | M.Eco40C12ORF11480P |
| 11485 | DNA-binding transcriptional regulator Fis | |||
| 15370 | serine/threonine protein phosphatase | |||
| 15375 | M | M.Esp911AORF3194P (100% identity) | M.Eco40C12ORF15375P | |
| 15380 | PerC family transcriptional regulator | |||
| 18475 | 81 aa hypothetical protein | |||
| 18480 | M | M.EcoG089ORF7575P (99% identity) | M.Eco40C12ORF18480P | |
| 18485 | 60 aa hypothetical protein | |||
| 18540 | TrmB family transcriptional regulator | |||
| 18545 | M | M.EspP049ORF1131P (73% identity) | M.Eco40C12ORF18545P | |
| 18560 | 180 aa hypothetical protein | |||
| 18780 | phosphohydrolase | |||
| 18785 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco40C12DcmP |
| 18790 | V | V.SsoSE61DcmP (100% identity) | V.Eco40C12DcmP | |
| 18795 | drug/metabolite exporter YedA | |||
| 20790 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco40C12ORF20795P | |
| 20800 | IS66-like element ISEc23 family transposase | |||
| 23290 | 103 aa hypothetical protein | |||
| 23295 | M | M.EspP049ORF1446P (100% identity) | M.Eco40C12ORF23295P | |
| 23300 | 81 aa hypothetical protein | |||
| plasmid pRHB40-C12_2 | ||||
| 25110 | 73 aa hypothetical protein | |||
| 25115 | M | M.EcoRM9088ORF1010P (99% identity) | SAY | M.Eco40C12ORF25115P |
| 25120 | 103 aa hypothetical protein | |||
| plasmid pRHB40-C12_3 | ||||
| 25375 | DUF1382 family protein | |||
| 25380 | M | M.Esp10290ORF1290P (100% identity) | GATC | M.Eco40C12ORF25380P |
| 25385 | regulator | |||
| 25460 | ash family protein | |||
| 25465 | R | Sso1099IP (100% identity) | CTGCAG | Eco40C12ORF25470P |
| 25470 | M | M.Sso1099I (100% identity) | CTGCAG | M.Eco40C12ORF25470P |
| 25475 | LexA family transcriptional regulator | |||
| plasmid pRHB40-C12_4 | ||||
| 25635 | Rop family plasmid primer RNA-binding protein | |||
| 25640 | M | M.Sen64991ORFAP (100% identity) | M.Eco40C12ORF25640P | |
| 25600 | R | Sen64991ORFAP (100% identity) | Eco40C12ORF25640P | |