Escherichia coli RHB08-C24 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli RHB08-C24 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,122,426 bp | CP057951 |
| plasmid pRHB08-C24_2: | 156,576 bp | CP057952 |
REBASE acronym: Eco08C24
Org_num: 43451
All begin HVW25_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21190 | adenine/cytosine-specific restriction | |||
| 21195 | R | Eco36C20ORF21195P (100% identity) | Eco08C24ORF21200P | |
| 21200 | M | M.Eco36C20ORF21195P (100% identity) | M.Eco08C24ORF21200P | |
| 21205 | S | S.Eco36C20ORF21195P (100% identity) | S.Eco08C24ORF21200P | |
| 21210 | endoribonuclease SymE | |||
| 21465 | DUF4942 domain-containing protein | |||
| 21470 | M | M.Eco36C20ORF21465P (100% identity) | M.Eco08C24ORF21470P | |
| 21475 | S | S.Eco36C20ORF21465P (100% identity) | S.Eco08C24ORF21470P | |
| 21480 | R | Eco36C20ORF21465P (100% identity) | Eco08C24ORF21470P | |
| 21490 | NADPH-dependent aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1850 | cell division protein DamX | |||
| 1855 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco08C24DamP |
| 1860 | ribulose-phosphate 3-epimerase | |||
| 2405 | DUF2556 family protein | |||
| 2410 | M | M.SflWW1ORF2205P (100% identity) | ATGCAT | M.Eco08C24ORF2410P |
| 2415 | DNA-binding transcriptional regulator Fis | |||
| 6070 | DUF3850 domain-containing protein | |||
| 6075 | M | M.Eco36C20ORF6080P (100% identity) | GATC | M.Eco08C24ORF6075P |
| 6080 | replication endonuclease | |||
| 9675 | phosphohydrolase | |||
| 9680 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.Eco08C24DcmP |
| 9685 | V | V.EcoR42DcmP (100% identity) | V.Eco08C24DcmP | |
| 9690 | drug/metabolite exporter YedA | |||
| 15205 | 92 aa hypothetical protein | |||
| 15210 | M | M.Lsp2021ORF20390P (100% identity) | M.Eco08C24ORF15210P | |
| 15215 | TrmB family transcriptional regulator | |||
| 17895 | DUF1317 family protein | |||
| 17900 | M | M.Sbo812ORFAP (100% identity) | M.Eco08C24ORF17900P | |
| 17905 | cell division protein ZapA | |||
| 21445 | HNH endonuclease | |||
| 21450 | R | Eco36C20ORF21445P (100% identity) | Eco08C24ORF21450P | |
| 21455 | McrC family protein | |||
| plasmid pRHB08-C24_2 | ||||
| 25160 | 73 aa hypothetical protein | |||
| 25165 | M | M.SflN92ORF24820P (100% identity) | M.Eco08C24ORF25165P | |
| 25170 | 101 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21185 | GTPase | |||
| 21190 | R | Ssp28760MrrP (100% identity) | Eco08C24MrrP | |
| 21195 | type I restriction-modification system | |||
| 21210 | endoribonuclease SymE | |||
| 21215 | R | Eco36C20McrBP (100% identity) | Eco08C24McrB2P | |
| 21220 | R | Eco36C20McrCP (100% identity) | Eco08C24McrC2P | |
| 21225 | 111 aa hypothetical protein | |||
| 21450 | HNH endonuclease | |||
| 21455 | R | Eco36C20McrC2P (100% identity) | Eco08C24McrCP | |
| 21460 | R | Eco36C20McrB2P (100% identity) | Eco08C24McrBP | |
| 21465 | DUF4942 domain-containing protein | |||