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Putative Escherichia coli RHB16-C08 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
Sequence length: | GenBank #: | |
Chromosome: | 5,387,387 bp | CP057751 |
plasmid pRHB16-C08_2: | 280,872 bp | CP057752 |
plasmid pRHB16-C08_3: | 146,408 bp | CP057753 |
plasmid pRHB16-C08_4: | 129,206 bp | CP057754 |
plasmid pRHB16-C08_5: | 92,094 bp | CP057755 |
plasmid pRHB16-C08_6: | 80,146 bp | CP057756 |
REBASE acronym: Eco16C08
Org_num: 43359
All begin HVX17_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
22645 | adenine/cytosine-specific restriction | |||
22650 | R | EcoC1738ORF24345P (100% identity) | Eco16C08ORF22655P | |
22655 | M | M.Eco16C13ORF22655P (100% identity) | M.Eco16C08ORF22655P | |
22660 | S | S.Eco16C13ORF22655P (100% identity) | S.Eco16C08ORF22655P | |
22665 | endoribonuclease SymE | |||
plasmid pRHB16-C08_3 | ||||
28050 | type II toxin-antitoxin system Phd/YefM family | |||
28055 | M | M.Eco16C13ORF28055P (100% identity) | M.Eco16C08ORF28055P | |
28060 | S | S.Eco16C13ORF28055P (100% identity) | S.Eco16C08ORF28055P | |
28065 | R | Eco16C11ORF28060P (99% identity) | Eco16C08ORF28055P | |
28070 | 3-phosphatase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
2020 | cell division protein DamX | |||
2025 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco16C08DamP |
2030 | ribulose-phosphate 3-epimerase | |||
2625 | DUF2556 family protein | |||
2630 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco16C08ORF2630P |
2635 | DNA-binding transcriptional regulator Fis | |||
9470 | phosphohydrolase | |||
9475 | M | M.Eco16C13DcmP (100% identity) | CCWGG | M.Eco16C08DcmP |
9480 | V | V.EcoC1738DcmP (100% identity) | V.Eco16C08DcmP | |
9485 | drug/metabolite exporter YedA | |||
10340 | TrmB family transcriptional regulator | |||
10345 | M | M.Eco16C13ORF10340P (100% identity) | M.Eco16C08ORF10345P | |
10350 | phage lysis protein EssD | |||
15705 | 92 aa hypothetical protein | |||
15710 | M | M.EcoW26ORF35400P (100% identity) | M.Eco16C08ORF15710P | |
15715 | TrmB family transcriptional regulator | |||
20295 | LexA family transcriptional regulator | |||
20300 | M | M.Eco16C13ORF20300P (100% identity) | GATC | M.Eco16C08ORF20300P |
20305 | PerC family transcriptional regulator | |||
20545 | flagellar basal body P-ring formation protein | |||
20550 | M | M.Eco16C13ORF20550P (100% identity) | M.Eco16C08ORF20550P | |
20555 | R | EcoC1738ORF22460P (100% identity) | Eco16C08ORF20550P | |
20560 | flagellar biosynthesis anti-sigma factor FlgM | |||
22445 | LexA family transcriptional regulator | |||
22450 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco16C08ORF18670P |
22455 | PerC family transcriptional regulator | |||
22885 | HNH endonuclease | |||
22890 | R | Eco16C13ORF22890P (100% identity) | Eco16C08ORF22890P | |
22895 | 678 aa hypothetical protein | |||
plasmid pRHB16-C08_2 | ||||
26930 | 55 aa hypothetical protein | |||
26935 | M | M.YpsF1ORFCP (100% identity) | M.Eco16C08ORF26935P | |
26940 | thermonuclease family protein | |||
27390 | 48 aa hypothetical protein | |||
27395 | M | M.YpsF1ORFBP (100% identity) | M.Eco16C08ORF27395P | |
27400 | 202 aa hypothetical protein | |||
27580 | DNA-binding protein | |||
27585 | M | M.SenBL10ORFDP (100% identity) | M.Eco16C08ORF27585P | |
27590 | 284 aa hypothetical protein | |||
plasmid pRHB16-C08_4 | ||||
28835 | 103 aa hypothetical protein | |||
28840 | M | M.Ecocq9ORF29710P (100% identity) | M.Eco16C08ORF28840P | |
28845 | 73 aa hypothetical protein | |||
plasmid pRHB16-C08_5 | ||||
29410 | glutamine--tRNA ligase | |||
29415 | M | M.EcoM1586ORF26310P (100% identity) | M.Eco16C08ORF29415P | |
29420 | 226 aa hypothetical protein | |||
plasmid pRHB16-C08_6 | ||||
29850 | 101 aa hypothetical protein | |||
29855 | M | M.SdyFF51ORF24515P (100% identity) | M.Eco16C08ORF29855P | |
29860 | 73 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
22640 | GTPase | |||
22645 | R | Ssp28760MrrP (100% identity) | Eco16C08MrrP | |
22650 | type I restriction-modification system | |||
22665 | endoribonuclease SymE | |||
22670 | R | EcoC1738McrBP (100% identity) | Eco16C08McrBP | |
22675 | R | Eco16C13McrCP (100% identity) | Eco16C08McrCP |