Escherichia coli RHB16-C13 |
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Putative Escherichia coli RHB16-C13 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,388,725 bp | CP057731 |
| plasmid pRHB16-C13_2: | 280,872 bp | CP057732 |
| plasmid pRHB16-C13_3: | 146,408 bp | CP057733 |
| plasmid pRHB16-C13_4: | 129,207 bp | CP057734 |
| plasmid pRHB16-C13_5: | 80,146 bp | CP057735 |
REBASE acronym: Eco16C13
Org_num: 43361
All begin HVX20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22645 | adenine/cytosine-specific restriction | |||
| 22650 | R | EcoC1738ORF24345P (100% identity) | Eco16C13ORF22655P | |
| 22655 | M | M.Eco16C11ORF22655P (100% identity) | M.Eco16C13ORF22655P | |
| 22660 | S | S.Eco16C11ORF22655P (100% identity) | S.Eco16C13ORF22655P | |
| 22665 | endoribonuclease SymE | |||
| plasmid pRHB16-C13_3 | ||||
| 28050 | type II toxin-antitoxin system Phd/YefM family | |||
| 28055 | M | M.Eco16C11ORF28060P (100% identity) | M.Eco16C13ORF28055P | |
| 28060 | S | S.Eco16C11ORF28060P (100% identity) | S.Eco16C13ORF28055P | |
| 28065 | R | Eco16C11ORF28060P (99% identity) | Eco16C13ORF28055P | |
| 28070 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2020 | cell division protein DamX | |||
| 2025 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco16C13DamP |
| 2030 | ribulose-phosphate 3-epimerase | |||
| 2625 | DUF2556 family protein | |||
| 2630 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco16C13ORF2630P |
| 2635 | DNA-binding transcriptional regulator Fis | |||
| 9465 | phosphohydrolase | |||
| 9470 | M | M.Eco16C11DcmP (100% identity) | CCWGG | M.Eco16C13DcmP |
| 9475 | V | V.EcoC1738DcmP (100% identity) | V.Eco16C13DcmP | |
| 9480 | drug/metabolite exporter YedA | |||
| 10335 | TrmB family transcriptional regulator | |||
| 10340 | M | M.Eco16C11ORF10345P (100% identity) | M.Eco16C13ORF10340P | |
| 10345 | phage lysis protein EssD | |||
| 15705 | 92 aa hypothetical protein | |||
| 15710 | M | M.EcoW26ORF35400P (100% identity) | M.Eco16C13ORF15710P | |
| 15715 | TrmB family transcriptional regulator | |||
| 20295 | LexA family transcriptional regulator | |||
| 20300 | M | M.Eco16C11ORF20300P (100% identity) | GATC | M.Eco16C13ORF20300P |
| 20305 | PerC family transcriptional regulator | |||
| 20545 | flagellar basal body P-ring formation protein | |||
| 20550 | M | M.Eco16C11ORF20550P (100% identity) | M.Eco16C13ORF20550P | |
| 20555 | R | EcoC1738ORF22460P (100% identity) | Eco16C13ORF20550P | |
| 20560 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 22445 | LexA family transcriptional regulator | |||
| 22450 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco16C13ORF18670P |
| 22455 | PerC family transcriptional regulator | |||
| 22885 | HNH endonuclease | |||
| 22890 | R | Eco16C11ORF22890P (100% identity) | Eco16C13ORF22890P | |
| 22895 | 678 aa hypothetical protein | |||
| plasmid pRHB16-C13_2 | ||||
| 26930 | 55 aa hypothetical protein | |||
| 26935 | M | M.YpsF1ORFCP (100% identity) | M.Eco16C13ORF26935P | |
| 26940 | thermonuclease family protein | |||
| 27390 | 48 aa hypothetical protein | |||
| 27395 | M | M.YpsF1ORFBP (100% identity) | M.Eco16C13ORF27395P | |
| 27400 | 202 aa hypothetical protein | |||
| 27580 | DNA-binding protein | |||
| 27585 | M | M.SenBL10ORFDP (100% identity) | M.Eco16C13ORF27585P | |
| 27590 | 284 aa hypothetical protein | |||
| plasmid pRHB16-C13_4 | ||||
| 28835 | 103 aa hypothetical protein | |||
| 28840 | M | M.Ecocq9ORF29710P (100% identity) | M.Eco16C13ORF28840P | |
| 28845 | 73 aa hypothetical protein | |||
| plasmid pRHB16-C13_5 | ||||
| 29275 | 101 aa hypothetical protein | |||
| 29280 | M | M.SdyFF51ORF24515P (100% identity) | M.Eco16C13ORF29280P | |
| 29285 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22640 | GTPase | |||
| 22645 | R | Ssp28760MrrP (100% identity) | Eco16C13MrrP | |
| 22650 | type I restriction-modification system | |||
| 22665 | endoribonuclease SymE | |||
| 22670 | R | EcoC1738McrBP (100% identity) | Eco16C13McrBP | |
| 22675 | R | Eco16C11McrCP (100% identity) | Eco16C13McrCP | |