Escherichia coli RHB17-C10 |
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Putative Escherichia coli RHB17-C10 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,800,647 bp | CP057693 |
| plasmid pRHB17-C10_3: | 91,303 bp | CP057695 |
REBASE acronym: Eco17C10
Org_num: 43368
All begin HVX28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5890 | IS1 family transposase | |||
| 5895 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Eco17C10ORF5905P |
| 5900 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco17C10ORF5905P |
| 5905 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco17C10ORF5905P |
| 5910 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1645 | cell division protein DamX | |||
| 1650 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco17C10DamP |
| 1655 | ribulose-phosphate 3-epimerase | |||
| 2270 | DUF2556 family protein | |||
| 2275 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco17C10ORF2275P |
| 2280 | site-specific integrase | |||
| 4010 | DUF3780 and DUF4357 domain-containing protein | |||
| 4015 | M | M.PmiCZP44ORF11275P (100% identity) | M.Eco17C10ORF4015P | |
| 4020 | DEAD/DEAH box helicase family protein | |||
| 9305 | phosphohydrolase | |||
| 9310 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco17C10DcmP |
| 9315 | V | V.SsoSE61DcmP (100% identity) | V.Eco17C10DcmP | |
| 9320 | drug/metabolite exporter YedA | |||
| 16465 | PerC family transcriptional regulator | |||
| 16470 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco17C10ORF16470P |
| 16475 | LexA family transcriptional regulator | |||
| 16505 | 67 aa hypothetical protein | |||
| 16510 | M | M.EcoNC22ORF10915P (100% identity) | M.Eco17C10ORF16510P | |
| 16515 | 63 aa hypothetical protein | |||
| 19390 | phage lysis protein EssD | |||
| 19395 | M | M.Sso63633ORF22290P (100% identity) | M.Eco17C10ORF19395P | |
| 19400 | 67 aa hypothetical protein | |||
| 19990 | McrC family protein | |||
| 19995 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco17C10ORF20000P |
| 20000 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco17C10ORF20000P |
| 20005 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M2.Eco17C10ORF20000P |
| 20010 | ATP-binding protein | |||
| plasmid pRHB17-C10_3 | ||||
| 23770 | 103 aa hypothetical protein | |||
| 23775 | M | M.Sfl60ORF25670P (100% identity) | SAY | M.Eco17C10ORF23775P |
| 23780 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4020 | DEAD/DEAH box helicase family protein | |||
| 4025 | R | PmiCZP44MrrP (100% identity) | Eco17C10MrrP | |
| 4030 | transposase | |||
| 8175 | recombinase family protein | |||
| 8180 | R | Ecochi7122GmrSDP (100% identity) | Eco17C10GmrSDP | |
| 8185 | IS3-like element IS2 family transposase | |||
| 19980 | glycosyltransferase family 2 protein | |||
| 19985 | R | EcosS3McrBP (100% identity) | Eco17C10McrBP | |
| 19990 | R | EcosS9McrCP (100% identity) | Eco17C10McrCP | |
| 19995 | Alw26I/Eco31I/Esp3I family type II restriction | |||