Escherichia coli RHB25-C13 |
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Putative Escherichia coli RHB25-C13 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,822,841 bp | CP057475 |
| plasmid pRHB25-C13_2: | 98,711 bp | CP057476 |
| plasmid pRHB25-C13_3: | 84,397 bp | CP057477 |
REBASE acronym: Eco25C13
Org_num: 43073
All begin HVY22_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5885 | IS1 family transposase | |||
| 5890 | R | Ror24150ORF17255P (100% identity) | GGANNNNNCTC | Eco25C13ORF5900P |
| 5895 | S | S.Ror24150ORF17255P (100% identity) | GGANNNNNCTC | S.Eco25C13ORF5900P |
| 5900 | M | M.Ror24150ORF17255P (100% identity) | GGANNNNNCTC | M.Eco25C13ORF5900P |
| 5905 | ParB N-terminal domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1685 | cell division protein DamX | |||
| 1690 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco25C13DamP |
| 1695 | ribulose-phosphate 3-epimerase | |||
| 2240 | DUF2556 family protein | |||
| 2245 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco25C13ORF2245P |
| 2250 | DNA-binding transcriptional regulator Fis | |||
| 9330 | phosphohydrolase | |||
| 9335 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.Eco25C13DcmP |
| 9340 | V | V.SsoSE61DcmP (100% identity) | V.Eco25C13DcmP | |
| 9345 | drug/metabolite exporter YedA | |||
| 15145 | replication endonuclease | |||
| 15150 | M | M.SflLIN8ORF15450P (100% identity) | GATC | M.Eco25C13ORF15150P |
| 15155 | TraR/DksA family transcriptional regulator | |||
| 19970 | sialate O-acetylesterase | |||
| 19975 | R | EcosB2CORFAP (100% identity) | Eco25C13ORF19975P | |
| 19980 | AAA family ATPase | |||
| plasmid pRHB25-C13_2 | ||||
| 23270 | tellurite/colicin resistance protein | |||
| 23285 | M | M.Eco06ORF9275P (98% identity) | M.Eco25C13ORF23285P | |
| 23290 | recombination-associated protein RdgC | |||
| plasmid pRHB25-C13_3 | ||||
| 23975 | 73 aa hypothetical protein | |||
| 23980 | M | M.SflN92ORF24820P (100% identity) | M.Eco25C13ORF23980P | |
| 23985 | 101 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19975 | HNH endonuclease | |||
| 19980 | R | Eco40C03McrBP (100% identity) | Eco25C13McrBP | |
| 19985 | R | EcoWMcrCP (34% identity) | Eco25C13McrCP | |
| 19990 | integrase | |||