Escherichia coli RHB30-C09 |
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Putative Escherichia coli RHB30-C09 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,167,871 bp | CP057302 |
| plasmid pRHB30-C09_2: | 120,503 bp | CP057303 |
| plasmid pRHB30-C09_3: | 111,016 bp | CP057304 |
| plasmid pRHB30-C09_4: | 107,564 bp | CP057305 |
| plasmid pRHB30-C09_5: | 71,653 bp | CP057306 |
| plasmid pRHB30-C09_8: | 5,962 bp | CP057309 |
REBASE acronym: Eco30C09
Org_num: 43110
All begin HVY76_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22350 | adenine/cytosine-specific restriction | |||
| 22355 | R | Msa17ORFC2P (98% identity) | AACNNNNNNGTGC | Eco30C09ORF22360P |
| 22360 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco30C09ORF22360P |
| 22365 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco30C09ORF22360P |
| 22370 | endoribonuclease SymE | |||
| plasmid pRHB30-C09_4 | ||||
| 27350 | IS1 family transposase | |||
| 27355 | R | Eco30C10ORF27410P (100% identity) | Eco30C09ORF27355P | |
| 27360 | IS91 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1735 | cell division protein DamX | |||
| 1740 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco30C09DamP |
| 1745 | ribulose-phosphate 3-epimerase | |||
| 2360 | DUF2556 family protein | |||
| 2365 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco30C09ORF2365P |
| 2370 | DNA-binding transcriptional regulator Fis | |||
| 6550 | TrmB family transcriptional regulator | |||
| 6555 | M | M.Eco38C24ORF6555P (100% identity) | M.Eco30C09ORF6555P | |
| 6570 | holin | |||
| 10510 | phosphohydrolase | |||
| 10515 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco30C09DcmP |
| 10520 | V | V.SflSTLE1DcmP (100% identity) | V.Eco30C09DcmP | |
| 10525 | drug/metabolite exporter YedA | |||
| 15385 | holin | |||
| 15400 | M | M.Eco38C24ORF16590P (100% identity) | M.Eco30C09ORF15400P | |
| 15405 | TrmB family transcriptional regulator | |||
| 17475 | replication endonuclease | |||
| 17480 | M | M.Eco38C24ORF18565P (100% identity) | GATC | M.Eco30C09ORF17480P |
| 17485 | TraR/DksA family transcriptional regulator | |||
| 19055 | NinE family protein | |||
| 19060 | M | M.Eco38C24ORF20510P (100% identity) | GATC | M.Eco30C09ORF19060P |
| 19065 | IS3 family transposase | |||
| plasmid pRHB30-C09_2 | ||||
| 26205 | 104 aa hypothetical protein | |||
| 26210 | M | M.Eco30C10ORF26265P (100% identity) | M.Eco30C09ORF26210P | |
| 26215 | 73 aa hypothetical protein | |||
| plasmid pRHB30-C09_3 | ||||
| 26720 | 73 aa hypothetical protein | |||
| 26725 | M | M.Eco30C10ORF26780P (100% identity) | M.Eco30C09ORF26725P | |
| 26730 | 101 aa hypothetical protein | |||
| 26915 | 103 aa hypothetical protein | |||
| 26920 | M | M.Eco30C10ORF26975P (100% identity) | M.Eco30C09ORF26920P | |
| 26925 | 73 aa hypothetical protein | |||
| plasmid pRHB30-C09_4 | ||||
| 27505 | 103 aa hypothetical protein | |||
| 27510 | M | M.Ecocq9ORF29710P (100% identity) | M.Eco30C09ORF27510P | |
| 27515 | 73 aa hypothetical protein | |||
| plasmid pRHB30-C09_5 | ||||
| 27920 | 103 aa hypothetical protein | |||
| 27925 | M | M.Eco38C24ORF28765P (100% identity) | M.Eco30C09ORF27925P | |
| 27930 | 73 aa hypothetical protein | |||
| plasmid pRHB30-C09_8 | ||||
| 28320 | helix-turn-helix transcriptional regulator | |||
| 28325 | M | M.Eco38C24ORF29030P (100% identity) | TCCGGA | M.Eco30C09ORF28325P |
| 28330 | R | Eco38C24ORF29030P (100% identity) | TCCGGA | Eco30C09ORF28325P |
| 28335 | MbeD family mobilization/exclusion protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22345 | GTPase | |||
| 22350 | R | SenHNK130MrrP (100% identity) | Eco30C09MrrP | |
| 22355 | type I restriction-modification system | |||
| 22370 | endoribonuclease SymE | |||
| 22375 | R | SenHNK130McrBP (100% identity) | Eco30C09McrBP | |
| 22380 | R | SenHNK130McrCP (100% identity) | Eco30C09McrCP | |