Escherichia coli RHB30-C10 |
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Putative Escherichia coli RHB30-C10 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,167,871 bp | CP057293 |
| plasmid pRHB30-C10_2: | 120,503 bp | CP057294 |
| plasmid pRHB30-C10_3: | 111,016 bp | CP057295 |
| plasmid pRHB30-C10_4: | 107,564 bp | CP057296 |
| plasmid pRHB30-C10_5: | 71,653 bp | CP057297 |
| plasmid pRHB30-C10_8: | 5,962 bp | CP057300 |
REBASE acronym: Eco30C10
Org_num: 43111
All begin HVY77_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22400 | adenine/cytosine-specific restriction | |||
| 22405 | R | Msa17ORFC2P (98% identity) | AACNNNNNNGTGC | Eco30C10ORF22410P |
| 22410 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco30C10ORF22410P |
| 22415 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco30C10ORF22410P |
| 22420 | endoribonuclease SymE | |||
| plasmid pRHB30-C10_4 | ||||
| 27405 | IS1 family transposase | |||
| 27410 | R | Eco30C09ORF27355P (100% identity) | Eco30C10ORF27410P | |
| 27415 | IS91 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1740 | cell division protein DamX | |||
| 1745 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco30C10DamP |
| 1750 | ribulose-phosphate 3-epimerase | |||
| 2370 | DUF2556 family protein | |||
| 2375 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco30C10ORF2375P |
| 2380 | DNA-binding transcriptional regulator Fis | |||
| 6565 | TrmB family transcriptional regulator | |||
| 6570 | M | M.Eco38C24ORF6555P (100% identity) | M.Eco30C10ORF6570P | |
| 6585 | holin | |||
| 10545 | phosphohydrolase | |||
| 10550 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco30C10DcmP |
| 10555 | V | V.SflSTLE1DcmP (100% identity) | V.Eco30C10DcmP | |
| 10560 | drug/metabolite exporter YedA | |||
| 15430 | holin | |||
| 15445 | M | M.Eco38C24ORF16590P (100% identity) | M.Eco30C10ORF15445P | |
| 15450 | TrmB family transcriptional regulator | |||
| 17525 | replication endonuclease | |||
| 17530 | M | M.Eco38C24ORF18565P (100% identity) | GATC | M.Eco30C10ORF17530P |
| 17535 | TraR/DksA family transcriptional regulator | |||
| 19105 | NinE family protein | |||
| 19110 | M | M.Eco38C24ORF20510P (100% identity) | GATC | M.Eco30C10ORF19110P |
| 19115 | IS3 family transposase | |||
| plasmid pRHB30-C10_2 | ||||
| 26260 | 104 aa hypothetical protein | |||
| 26265 | M | M.Eco30C09ORF26210P (100% identity) | M.Eco30C10ORF26265P | |
| 26270 | 73 aa hypothetical protein | |||
| plasmid pRHB30-C10_3 | ||||
| 26775 | 73 aa hypothetical protein | |||
| 26780 | M | M.Eco30C09ORF26725P (100% identity) | M.Eco30C10ORF26780P | |
| 26785 | 101 aa hypothetical protein | |||
| 26970 | 103 aa hypothetical protein | |||
| 26975 | M | M.Eco30C09ORF26920P (100% identity) | M.Eco30C10ORF26975P | |
| 26980 | 73 aa hypothetical protein | |||
| plasmid pRHB30-C10_4 | ||||
| 27560 | 103 aa hypothetical protein | |||
| 27565 | M | M.Ecocq9ORF29710P (100% identity) | M.Eco30C10ORF27565P | |
| 27570 | 73 aa hypothetical protein | |||
| plasmid pRHB30-C10_5 | ||||
| 27980 | 103 aa hypothetical protein | |||
| 27985 | M | M.Eco38C24ORF28765P (100% identity) | M.Eco30C10ORF27985P | |
| 27990 | 73 aa hypothetical protein | |||
| plasmid pRHB30-C10_8 | ||||
| 28400 | MbeD family mobilization/exclusion protein | |||
| 28405 | R | Eco38C24ORF29030P (100% identity) | TCCGGA | Eco30C10ORF28410P |
| 28410 | M | M.Eco38C24ORF29030P (100% identity) | TCCGGA | M.Eco30C10ORF28410P |
| 28415 | helix-turn-helix transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22395 | GTPase | |||
| 22400 | R | SenHNK130MrrP (100% identity) | Eco30C10MrrP | |
| 22405 | type I restriction-modification system | |||
| 22420 | endoribonuclease SymE | |||
| 22425 | R | SenHNK130McrBP (100% identity) | Eco30C10McrBP | |
| 22430 | R | SenHNK130McrCP (100% identity) | Eco30C10McrCP | |