Escherichia coli RHB30-C16 |
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Putative Escherichia coli RHB30-C16 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,935,501 bp | CP057287 |
| plasmid pRHB30-C16_2: | 196,445 bp | CP057288 |
| plasmid pRHB30-C16_3: | 85,551 bp | CP057289 |
REBASE acronym: Eco30C16
Org_num: 43112
All begin HVY78_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2940 | IS1-like element IS1A family transposase | |||
| 2945 | S | S.SflSTLE3ORF19325P (55% identity) | S.Eco30C16ORF2950P | |
| 2950 | M | M.SflSTLE3ORF19325P (100% identity) | M.Eco30C16ORF2950P | |
| 2955 | restriction endonuclease | |||
| plasmid pRHB30-C16_3 | ||||
| 25540 | type II toxin-antitoxin system Phd/YefM family | |||
| 25545 | M | M.Eco30C20ORF25535P (100% identity) | M.Eco30C16ORF25545P | |
| 25550 | S | S.Eco30C20ORF25535P (100% identity) | S.Eco30C16ORF25545P | |
| 25555 | R | Eco30C20ORF25535P (100% identity) | Eco30C16ORF25545P | |
| 25560 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10 | replication endonuclease | |||
| 15 | M | M.EcoDEC13DORF4454P (100% identity) | M.Eco30C16ORF15P | |
| 20 | 329 aa hypothetical protein | |||
| 13470 | drug/metabolite exporter YedA | |||
| 13475 | V | V.SflFF64DcmP (100% identity) | V.Eco30C16DcmP | |
| 13480 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco30C16DcmP |
| 13485 | phosphohydrolase | |||
| 15215 | 401 aa hypothetical protein | |||
| 15220 | M | M.Eco30C20ORF20875P (100% identity) | M.Eco30C16ORF15220P | |
| 15225 | holin | |||
| 16515 | PerC family transcriptional regulator | |||
| 16520 | M | M.EfeC18ORF5895P (100% identity) | M.Eco30C16ORF16520P | |
| 16525 | DUF1382 family protein | |||
| 17105 | 121 aa hypothetical protein | |||
| 17110 | R | Sso8033ORF3755P (100% identity) | Eco30C16ORF17115P | |
| 17115 | M | M.SflSTLE1ORF5615P (100% identity) | M.Eco30C16ORF17115P | |
| 17120 | 257 aa hypothetical protein | |||
| 20915 | DNA-binding transcriptional regulator Fis | |||
| 20920 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco30C16ORF20920P |
| 20925 | DUF2556 family protein | |||
| 21540 | ribulose-phosphate 3-epimerase | |||
| 21545 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco30C16DamP |
| 21550 | cell division protein DamX | |||
| plasmid pRHB30-C16_2 | ||||
| 25185 | DNA-binding protein | |||
| 25190 | M | M.SenBL10ORFDP (100% identity) | M.Eco30C16ORF25190P | |
| 25195 | 284 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7155 | recombination protein NinB | |||
| 7160 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco30C16ORF7160P |
| 7165 | NinE family protein | |||