Escherichia coli RHB34-C14 |
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Putative Escherichia coli RHB34-C14 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,644,015 bp | CP057171 |
| plasmid pRHB34-C14_2: | 94,854 bp | CP057172 |
REBASE acronym: Eco34C14
Org_num: 43139
All begin HVZ25_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18955 | adenine/cytosine-specific restriction | |||
| 18960 | R | Ecos15955ORF12100P (87% identity) | Eco34C14ORF18960P | |
| 18965 | DEAD/DEAH box helicase | |||
| plasmid pRHB34-C14_2 | ||||
| 22475 | DNA polymerase III subunit theta | |||
| 22480 | M | M.Eco5L08ORF20010P (100% identity) | GAANNNNNNTAYG | M.Eco34C14ORF22480P |
| 22485 | S | S.Ecoi162ORF4671P (100% identity) | GAANNNNNNTAYG | S.Eco34C14ORF22480P |
| 22490 | R | Eco27C18ORF23300P (100% identity) | GAANNNNNNTAYG | Eco34C14ORF22480P |
| 22495 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1670 | cell division protein DamX | |||
| 1675 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco34C14DamP |
| 1680 | ribulose-phosphate 3-epimerase | |||
| 2295 | DUF2556 family protein | |||
| 2300 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco34C14ORF2300P |
| 2305 | DNA-binding transcriptional regulator Fis | |||
| 3780 | DEAD/DEAH box helicase | |||
| 3785 | RM | Eco3C16ORF3775P (100% identity) | Eco34C14ORF3785P | |
| 8715 | phosphohydrolase | |||
| 8720 | M | M.SflLIN6DcmP (99% identity) | CCWGG | M.Eco34C14DcmP |
| 8725 | V | V.SflFF64DcmP (99% identity) | V.Eco34C14DcmP | |
| 8730 | drug/metabolite exporter YedA | |||
| 10680 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco34C14ORF10685P | |
| 10690 | 60 aa hypothetical protein | |||
| 14280 | oxidoreductase | |||
| 14285 | M | M.EcoCPF6ORF21970P (100% identity) | GATC | M.Eco34C14ORF14285P |
| 14290 | TraR/DksA family transcriptional regulator | |||
| plasmid pRHB34-C14_2 | ||||
| 22585 | SPFH/Band 7/PHB domain protein | |||
| 22605 | M | M.Eco27C18ORF23425P (100% identity) | M.Eco34C14ORF22605P | |
| 22610 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12705 | isocitrate dehydrogenase | |||
| 12710 | R | EcosEC27McrCP (100% identity) | Eco34C14McrCP | |
| 12715 | R | EcoUKMcrBP (100% identity) | Eco34C14McrBP | |
| 12720 | recombinase family protein | |||
| 18950 | GTPase | |||
| 18955 | R | Ssp28760MrrP (100% identity) | Eco34C14MrrP | |
| 18960 | type I restriction-modification system | |||