Escherichia coli RHB38-C24 |
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Putative Escherichia coli RHB38-C24 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,354,666 bp | CP057075 |
| plasmid pRHB38-C24_2: | 123,830 bp | CP057076 |
| plasmid pRHB38-C24_3: | 51,116 bp | CP057077 |
| plasmid pRHB38-C24_4: | 50,516 bp | CP057078 |
| plasmid pRHB38-C24_6: | 5,973 bp | CP057080 |
REBASE acronym: Eco38C24
Org_num: 43162
All begin HVZ77_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23880 | adenine/cytosine-specific restriction | |||
| 23885 | R | Msa17ORFC2P (98% identity) | AACNNNNNNGTGC | Eco38C24ORF23890P |
| 23890 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco38C24ORF23890P |
| 23895 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco38C24ORF23890P |
| 23900 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1745 | cell division protein DamX | |||
| 1750 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco38C24DamP |
| 1755 | ribulose-phosphate 3-epimerase | |||
| 2370 | DUF2556 family protein | |||
| 2375 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco38C24ORF2375P |
| 2380 | DNA-binding transcriptional regulator Fis | |||
| 6550 | TrmB family transcriptional regulator | |||
| 6555 | M | M.Eco30C10ORF6570P (100% identity) | M.Eco38C24ORF6555P | |
| 6570 | holin | |||
| 8100 | recombination protein NinB | |||
| 8105 | M | M.Sfl9783ORF5079P (100% identity) | M.Eco38C24ORF8105P | |
| 8110 | NinE family protein | |||
| 11040 | phosphohydrolase | |||
| 11045 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco38C24DcmP |
| 11050 | V | V.SflSTLE1DcmP (100% identity) | V.Eco38C24DcmP | |
| 11055 | drug/metabolite exporter YedA | |||
| 16575 | holin | |||
| 16590 | M | M.Eco30C10ORF15445P (100% identity) | M.Eco38C24ORF16590P | |
| 16595 | TrmB family transcriptional regulator | |||
| 18560 | replication endonuclease | |||
| 18565 | M | M.Eco30C10ORF17530P (100% identity) | GATC | M.Eco38C24ORF18565P |
| 18570 | TraR/DksA family transcriptional regulator | |||
| 19220 | NinE family protein | |||
| 19225 | M | M.EcoS944ORF17230P (100% identity) | M.Eco38C24ORF19225P | |
| 19230 | recombination protein NinB | |||
| 20505 | NinE family protein | |||
| 20510 | M | M.Eco30C10ORF19110P (100% identity) | GATC | M.Eco38C24ORF20510P |
| 20515 | recombination protein NinB | |||
| plasmid pRHB38-C24_2 | ||||
| 27905 | 73 aa hypothetical protein | |||
| 27910 | M | M.Sen1357ORF24335P (100% identity) | M.Eco38C24ORF27910P | |
| 27915 | 103 aa hypothetical protein | |||
| plasmid pRHB38-C24_3 | ||||
| 28210 | recombinase family protein | |||
| 28215 | R | Ssp3CORF24390P (100% identity) | CCWGG | Eco38C24ORF28220P |
| 28220 | M | M.SflSTLE4ORF22820P (100% identity) | CCWGG | M.Eco38C24ORF28220P |
| 28225 | IS1 family transposase | |||
| plasmid pRHB38-C24_4 | ||||
| 28760 | 73 aa hypothetical protein | |||
| 28765 | M | M.Eco30C10ORF27985P (100% identity) | M.Eco38C24ORF28765P | |
| 28770 | 103 aa hypothetical protein | |||
| plasmid pRHB38-C24_6 | ||||
| 29030 | M | M.Eco30C10ORF28410P (100% identity) | TCCGGA | M.Eco38C24ORF29030P |
| 29035 | helix-turn-helix transcriptional regulator | |||
| 29040 | Rop family plasmid primer RNA-binding protein | |||
| 29045 | MobC family plasmid mobilization relaxosome | |||
| 29050 | relaxase/mobilization nuclease domain-containing | |||
| 29055 | MbeB family mobilization protein | |||
| 29060 | MbeD family mobilization/exclusion protein | |||
| 29025 | R | Eco30C10ORF28410P (100% identity) | TCCGGA | Eco38C24ORF29030P |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23875 | GTPase | |||
| 23880 | R | SenHNK130MrrP (100% identity) | Eco38C24MrrP | |
| 23885 | type I restriction-modification system | |||
| 23900 | endoribonuclease SymE | |||
| 23905 | R | SenHNK130McrBP (100% identity) | Eco38C24McrBP | |
| 23910 | R | SenHNK130McrCP (100% identity) | Eco38C24McrCP | |