Escherichia coli RHB39-C14 |
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Putative Escherichia coli RHB39-C14 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,150,562 bp | CP057062 |
| plasmid pRHB39-C14_2: | 55,483 bp | CP057063 |
REBASE acronym: Eco39C14
Org_num: 43164
All begin HVZ83_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15650 | AAA family ATPase | |||
| 15655 | S | S.Eco6C06ORF720P (100% identity) | S.Eco39C14ORF15660P | |
| 15660 | M | M.Eco6C06ORF720P (100% identity) | M.Eco39C14ORF15660P | |
| 15665 | R | Eco6C06ORF720P (100% identity) | Eco39C14ORF15660P | |
| 15670 | MmcB family DNA repair protein | |||
| 19525 | glycoprotein 3 | |||
| 19530 | M | M.Efe38C01ORF18910P (57% identity) | M.Eco39C14ORF19530BP | |
| 19535 | IS3-like element IS2 family transposase | |||
| 19540 | M | M.SsoSE61ORF6540P (21% identity) | M.Eco39C14ORF19530AP | |
| 19545 | DUF4942 domain-containing protein | |||
| 19760 | endoribonuclease SymE | |||
| 19765 | S | S.EcoYPE10ORF21230P (100% identity) | S.Eco39C14ORF19770P | |
| 19770 | M | M.EcoYPE10ORF21230P (100% identity) | M.Eco39C14ORF19770P | |
| 19775 | IS3-like element IS3 family transposase | |||
| 19780 | R | SspS13ORF3945P (20% identity) | Eco39C14ORF19770P | |
| 19785 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1995 | TrmB family transcriptional regulator | |||
| 2000 | M | M.Eco39C22ORF2005P (100% identity) | M.Eco39C14ORF2000P | |
| 2025 | holin | |||
| 2250 | DUF1804 family protein | |||
| 2255 | M | M.EspP049ORF3912P (100% identity) | M.Eco39C14ORF2255P | |
| 2260 | phage terminase large subunit | |||
| 6105 | drug/metabolite exporter YedA | |||
| 6110 | V | V.SsoSE61DcmP (100% identity) | V.Eco39C14DcmP | |
| 6115 | M | M.Eco40C09DcmP (100% identity) | CCWGG | M.Eco39C14DcmP |
| 6120 | phosphohydrolase | |||
| 9545 | replication endonuclease | |||
| 9550 | M | M.SflLIN17ORF14475P (100% identity) | GATC | M.Eco39C14ORF9550P |
| 9555 | TraR/DksA family transcriptional regulator | |||
| 11350 | transposase | |||
| 11355 | R | EcoA41ORF21415P (97% identity) | GGCGGA | Eco39C14ORF11360P |
| ??? | M | M1.EcoA41ORF21415P (99% identity) | GGCGGA | M1.Eco39C14ORF11360P |
| 11365 | M | M2.EcoA41ORF21415P (100% identity) | GGCGGA | M2.Eco39C14ORF11360P |
| 11370 | conjugal transfer protein TraG N-terminal | |||
| 13570 | DNA-binding transcriptional regulator Fis | |||
| 13575 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco39C14ORF13575P |
| 13580 | DUF2556 family protein | |||
| 14195 | ribulose-phosphate 3-epimerase | |||
| 14200 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco39C14DamP |
| 14205 | cell division protein DamX | |||
| 19565 | McrC family protein | |||
| 19570 | R | SflFF17ORF19275P (100% identity) | Eco39C14ORF19570P | |
| 19575 | HNH endonuclease | |||
| plasmid pRHB39-C14_2 | ||||
| 24805 | 103 aa hypothetical protein | |||
| 24810 | M | M.Eco40C22ORF25300P (100% identity) | M.Eco39C14ORF24810P | |
| 24815 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19545 | DUF4942 domain-containing protein | |||
| 19550 | R | EcoYPE3McrBP (73% identity) | Eco39C14McrBP | |
| 19555 | IS3-like element IS3 family transposase | |||
| 19560 | ATP-binding protein | |||
| 19565 | R | EcoYPE3McrCP (100% identity) | Eco39C14McrCP | |
| 19570 | HNH endonuclease | |||