Escherichia coli RHB39-C22 |
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Putative Escherichia coli RHB39-C22 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,150,671 bp | CP057040 |
| plasmid pRHB39-C22_2: | 55,483 bp | CP057041 |
REBASE acronym: Eco39C22
Org_num: 43169
All begin HVZ88_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15665 | AAA family ATPase | |||
| 15670 | S | S.Eco6C06ORF720P (100% identity) | S.Eco39C22ORF15675P | |
| 15675 | M | M.Eco6C06ORF720P (100% identity) | M.Eco39C22ORF15675P | |
| 15680 | R | Eco6C06ORF720P (100% identity) | Eco39C22ORF15675P | |
| 15685 | MmcB family DNA repair protein | |||
| 19545 | glycoprotein 3 | |||
| 19550 | M | M.Efe38C01ORF18910P (57% identity) | M.Eco39C22ORF19550BP | |
| 19555 | IS3-like element IS2 family transposase | |||
| 19560 | M | M.SsoSE61ORF6540P (21% identity) | M.Eco39C22ORF19550AP | |
| 19565 | DUF4942 domain-containing protein | |||
| 19780 | endoribonuclease SymE | |||
| 19785 | S | S.EcoYPE10ORF21230P (100% identity) | S.Eco39C22ORF19790P | |
| 19790 | M | M.EcoYPE10ORF21230P (100% identity) | M.Eco39C22ORF19790P | |
| 19795 | IS3-like element IS3 family transposase | |||
| 19800 | R | SspS13ORF3945P (20% identity) | Eco39C22ORF19790P | |
| 19805 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2000 | TrmB family transcriptional regulator | |||
| 2005 | M | M.Eco39C14ORF2000P (100% identity) | M.Eco39C22ORF2005P | |
| 2030 | holin | |||
| 2255 | DUF1804 family protein | |||
| 2260 | M | M.EspP049ORF3912P (100% identity) | M.Eco39C22ORF2260P | |
| 2265 | phage terminase large subunit | |||
| 6120 | drug/metabolite exporter YedA | |||
| 6125 | V | V.SsoSE61DcmP (100% identity) | V.Eco39C22DcmP | |
| 6130 | M | M.Eco40C09DcmP (100% identity) | CCWGG | M.Eco39C22DcmP |
| 6135 | phosphohydrolase | |||
| 9560 | replication endonuclease | |||
| 9565 | M | M.SflLIN17ORF14475P (100% identity) | GATC | M.Eco39C22ORF9565P |
| 9570 | TraR/DksA family transcriptional regulator | |||
| 11365 | transposase | |||
| 11370 | R | EcoA41ORF21415P (97% identity) | GGCGGA | Eco39C22ORF11375P |
| ??? | M | M1.EcoA41ORF21415P (99% identity) | GGCGGA | M1.Eco39C22ORF11375P |
| 11380 | M | M2.EcoA41ORF21415P (100% identity) | GGCGGA | M2.Eco39C22ORF11375P |
| 11385 | conjugal transfer protein TraG N-terminal | |||
| 13585 | DNA-binding transcriptional regulator Fis | |||
| 13590 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco39C22ORF13590P |
| 13595 | DUF2556 family protein | |||
| 14210 | ribulose-phosphate 3-epimerase | |||
| 14215 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco39C22DamP |
| 14220 | cell division protein DamX | |||
| 19585 | McrC family protein | |||
| 19590 | R | SflFF17ORF19275P (100% identity) | Eco39C22ORF19590P | |
| 19595 | HNH endonuclease | |||
| plasmid pRHB39-C22_2 | ||||
| 24825 | 103 aa hypothetical protein | |||
| 24830 | M | M.Eco40C22ORF25300P (100% identity) | M.Eco39C22ORF24830P | |
| 24835 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19565 | DUF4942 domain-containing protein | |||
| 19570 | R | EcoYPE3McrBP (73% identity) | Eco39C22McrBP | |
| 19575 | IS3-like element IS3 family transposase | |||
| 19580 | ATP-binding protein | |||
| 19585 | R | EcoYPE3McrCP (100% identity) | Eco39C22McrCP | |
| 19590 | HNH endonuclease | |||