Escherichia coli RHB40-C09 |
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Putative Escherichia coli RHB40-C09 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,065,761 bp | CP057020 |
| plasmid pRHB40-C09_2: | 54,502 bp | CP057021 |
REBASE acronym: Eco40C09
Org_num: 43176
All begin HVZ96_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15055 | AAA family ATPase | |||
| 15060 | S | S.Eco6C06ORF720P (100% identity) | S.Eco40C09ORF15065P | |
| 15065 | M | M.Eco6C06ORF720P (100% identity) | M.Eco40C09ORF15065P | |
| 15070 | R | Eco6C06ORF720P (100% identity) | Eco40C09ORF15065P | |
| 15075 | MmcB family DNA repair protein | |||
| 18925 | glycoprotein 3 | |||
| 18930 | M | M.Efe38C01ORF18910P (57% identity) | M.Eco40C09ORF18930BP | |
| 18935 | IS3-like element IS2 family transposase | |||
| 18940 | M | M.SsoSE61ORF6540P (21% identity) | M.Eco40C09ORF18930AP | |
| 18945 | DUF4942 domain-containing protein | |||
| 19160 | endoribonuclease SymE | |||
| 19165 | S | S.EcoYPE10ORF21230P (100% identity) | S.Eco40C09ORF19170P | |
| 19170 | M | M.EcoYPE10ORF21230P (100% identity) | M.Eco40C09ORF19170P | |
| 19175 | IS3-like element IS3 family transposase | |||
| 19180 | R | SspS13ORF3945P (20% identity) | Eco40C09ORF19170P | |
| 19185 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5520 | drug/metabolite exporter YedA | |||
| 5525 | V | V.SsoSE61DcmP (100% identity) | V.Eco40C09DcmP | |
| 5530 | M | M.Eco39C22DcmP (100% identity) | CCWGG | M.Eco40C09DcmP |
| 5535 | phosphohydrolase | |||
| 8950 | replication endonuclease | |||
| 8955 | M | M.SflLIN17ORF14475P (100% identity) | GATC | M.Eco40C09ORF8955P |
| 8960 | TraR/DksA family transcriptional regulator | |||
| 10755 | transposase | |||
| 10760 | R | EcoA41ORF21415P (97% identity) | GGCGGA | Eco40C09ORF10765P |
| ??? | M | M1.EcoA41ORF21415P (99% identity) | GGCGGA | M1.Eco40C09ORF10765P |
| 10770 | M | M2.EcoA41ORF21415P (100% identity) | GGCGGA | M2.Eco40C09ORF10765P |
| 10775 | conjugal transfer protein TraG N-terminal | |||
| 12975 | DNA-binding transcriptional regulator Fis | |||
| 12980 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco40C09ORF12980P |
| 12985 | DUF2556 family protein | |||
| 13600 | ribulose-phosphate 3-epimerase | |||
| 13605 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco40C09DamP |
| 13610 | cell division protein DamX | |||
| 18965 | McrC family protein | |||
| 18970 | R | SflFF17ORF19275P (100% identity) | Eco40C09ORF18970P | |
| 18975 | HNH endonuclease | |||
| plasmid pRHB40-C09_2 | ||||
| 24205 | 103 aa hypothetical protein | |||
| 24210 | M | M.Eco40C22ORF25300P (100% identity) | M.Eco40C09ORF24210P | |
| 24215 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18945 | DUF4942 domain-containing protein | |||
| 18950 | R | EcoYPE3McrBP (73% identity) | Eco40C09McrBP | |
| 18955 | IS3-like element IS3 family transposase | |||
| 18960 | ATP-binding protein | |||
| 18965 | R | EcoYPE3McrCP (100% identity) | Eco40C09McrCP | |
| 18970 | HNH endonuclease | |||