Escherichia coli RHB40-C21 |
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Putative Escherichia coli RHB40-C21 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,877,231 bp | CP057012 |
| plasmid pRHB40-C21_2: | 89,908 bp | CP057013 |
REBASE acronym: Eco40C21
Org_num: 43180
All begin HV001_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20120 | adenine/cytosine-specific restriction | |||
| 20125 | R | Eco42C22ORF11485P (100% identity) | Eco40C21ORF20130P | |
| 20130 | M | M.Eco40C16ORF20120P (100% identity) | M.Eco40C21ORF20130P | |
| 20135 | S | S.Eco40C16ORF20120P (100% identity) | S.Eco40C21ORF20130P | |
| 20140 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1715 | cell division protein DamX | |||
| 1720 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco40C21DamP |
| 1725 | ribulose-phosphate 3-epimerase | |||
| 2270 | DUF2556 family protein | |||
| 2275 | M | M.Eco40C16ORF2275P (100% identity) | ATGCAT | M.Eco40C21ORF2275P |
| 2280 | DNA-binding transcriptional regulator Fis | |||
| 6195 | Com family DNA-binding transcriptional | |||
| 6200 | M | M.EcoH22ORF6530P (100% identity) | M.Eco40C21ORF6200P | |
| 6205 | ribosome-associated translation inhibitor RaiA | |||
| 9565 | phosphohydrolase | |||
| 9570 | M | M.Eco40C16DcmP (100% identity) | CCWGG | M.Eco40C21DcmP |
| 9575 | V | V.Ecostr9DcmP (74% identity) | V.Eco40C21DcmP | |
| 9580 | drug/metabolite exporter YedA | |||
| 11410 | TrmB family transcriptional regulator | |||
| 11415 | M | M.EcoV04ORF12550P (100% identity) | M.Eco40C21ORF11415P | |
| 11420 | 92 aa hypothetical protein | |||
| 20355 | HNH endonuclease | |||
| 20360 | R | Ecoi362ORF3874P (100% identity) | Eco40C21ORF20360P | |
| 20365 | 59 aa hypothetical protein | |||
| plasmid pRHB40-C21_2 | ||||
| 23670 | 73 aa hypothetical protein | |||
| 23675 | M | M.EcoWY5172ORF23370P (100% identity) | M.Eco40C21ORF23675P | |
| 23680 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20115 | GTPase | |||
| 20120 | R | Ssp28760MrrP (100% identity) | Eco40C21MrrP | |
| 20125 | type I restriction-modification system | |||
| 20140 | endoribonuclease SymE | |||
| 20145 | R | Eco40C16McrBP (100% identity) | Eco40C21McrBP | |
| 20150 | R | Eco40C16McrCP (100% identity) | Eco40C21McrCP | |