Escherichia coli RHB41-C14 |
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Putative Escherichia coli RHB41-C14 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,862,435 bp | CP056974 |
| plasmid pRHB41-C14_2: | 94,957 bp | CP056975 |
| plasmid pRHB41-C14_3: | 90,751 bp | CP056976 |
| plasmid pRHB41-C14_4: | 89,222 bp | CP056977 |
| plasmid pRHB41-C14_5: | 51,984 bp | CP056978 |
REBASE acronym: Eco41C14
Org_num: 43187
All begin HV009_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5715 | IS1 family transposase | |||
| 5720 | R | Ror24150ORF17255P (100% identity) | GGANNNNNCTC | Eco41C14ORF5730P |
| 5725 | S | S.Eco03C22ORF5710P (100% identity) | GGANNNNNCTC | S.Eco41C14ORF5730P |
| 5730 | M | M.Eco03C22ORF5710BP (100% identity) | GGANNNNNCTC | M.Eco41C14ORF5730BP |
| 5735 | IS3-like element IS3 family transposase | |||
| 5740 | M | M.Eco03C22ORF5710AP (100% identity) | GGANNNNNCTC | M.Eco41C14ORF5730AP |
| 5745 | IS1 family transposase | |||
| 9745 | IS1 family transposase | |||
| 9750 | R | SflN97ORF14060P (100% identity) | Eco41C14ORF9760P | |
| 9755 | S | S.SflN97ORF14060P (100% identity) | S.Eco41C14ORF9760P | |
| 9760 | M | M.SflN97ORF14060P (100% identity) | M.Eco41C14ORF9760P | |
| 9765 | GTPase family protein | |||
| 20755 | 322 aa hypothetical protein | |||
| 20760 | R | SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | Eco41C14ORF20765P |
| 20765 | M | M.SspS13ORF3945P (40% identity) | RTCANNNNNNNNGTGG | M.Eco41C14ORF20765AP |
| 20770 | IS3-like element IS3 family transposase | |||
| 20775 | M | M.SspS13ORF3945P (59% identity) | RTCANNNNNNNNGTGG | M.Eco41C14ORF20765BP |
| 20780 | S | S.SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | S.Eco41C14ORF20765P |
| 20785 | endoribonuclease SymE | |||
| 20985 | restriction endonuclease subunit M | |||
| 20990 | M | M.Eco03C22ORF20980P (100% identity) | M.Eco41C14ORF20990P | |
| 20995 | S | S.Eco03C22ORF20980P (100% identity) | S.Eco41C14ORF20990P | |
| 21000 | R | SspS13ORF3745P (100% identity) | Eco41C14ORF20990P | |
| 21010 | NADPH-dependent aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1605 | cell division protein DamX | |||
| 1610 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco41C14DamP |
| 1615 | ribulose-phosphate 3-epimerase | |||
| 2235 | DUF2556 family protein | |||
| 2240 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco41C14ORF2240P |
| 2245 | DNA-binding transcriptional regulator Fis | |||
| 5810 | TraR/DksA family transcriptional regulator | |||
| 5815 | M | M.Eco03C22ORF5795P (100% identity) | M.Eco41C14ORF5815P | |
| 5820 | replication endonuclease | |||
| 5970 | IS4-like element ISVsa5 family transposase | |||
| 5975 | M | M.Ecoi64ORF2425P (100% identity) | M.Eco41C14ORF5975P | |
| 5980 | AAA family ATPase | |||
| 6055 | 67 aa hypothetical protein | |||
| 6060 | M | M.Sso63633ORF22290P (100% identity) | M.Eco41C14ORF6060P | |
| 6065 | phage lysis protein EssD | |||
| 14815 | drug/metabolite exporter YedA | |||
| 14820 | V | V.SsoSE61DcmP (100% identity) | V.Eco41C14DcmP | |
| 14825 | M | M.EcoCP61DcmP (100% identity) | CCWGG | M.Eco41C14DcmP |
| 14830 | phosphohydrolase | |||
| 18900 | DUF1317 family protein | |||
| 18905 | M | M.Eco29C15ORF18300P (100% identity) | M.Eco41C14ORF18905P | |
| 18910 | 93 aa hypothetical protein | |||
| 20480 | phage minor tail protein L | |||
| 20485 | M | M.SflN101ORF11410P (100% identity) | GATC | M.Eco41C14ORF20485P |
| 20490 | PerC family transcriptional regulator | |||
| 20955 | HNH endonuclease | |||
| 20960 | R | SflFF17ORF19275P (100% identity) | Eco41C14ORF20960P | |
| 20965 | McrC family protein | |||
| plasmid pRHB41-C14_2 | ||||
| 24205 | 73 aa hypothetical protein | |||
| 24210 | M | M.SdyFF51ORF24515P (100% identity) | M.Eco41C14ORF24210P | |
| 24215 | 101 aa hypothetical protein | |||
| plasmid pRHB41-C14_3 | ||||
| 24445 | 103 aa hypothetical protein | |||
| 24450 | M | M.SflC32ORFDP (100% identity) | SAY | M.Eco41C14ORF24450P |
| 24455 | 73 aa hypothetical protein | |||
| plasmid pRHB41-C14_4 | ||||
| 25000 | 103 aa hypothetical protein | |||
| 25005 | M | M.Sen1357ORF24335P (100% identity) | M.Eco41C14ORF25005P | |
| 25010 | 73 aa hypothetical protein | |||
| plasmid pRHB41-C14_5 | ||||
| 25380 | recombinase family protein | |||
| 25385 | R | Ssp3CORF24390P (100% identity) | CCWGG | Eco41C14ORF25390P |
| 25390 | M | M.SflSTLE4ORF22820P (100% identity) | CCWGG | M.Eco41C14ORF25390P |
| 25395 | IS1 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9570 | 141 aa hypothetical protein | |||
| 9575 | R | SflN97McrBP (100% identity) | Eco41C14McrBP | |
| 9580 | R | SflN97McrCP (100% identity) | Eco41C14McrCP | |
| 9585 | IS5 family transposase | |||
| 20960 | HNH endonuclease | |||
| 20965 | R | SflFF17McrCP (100% identity) | Eco41C14McrC2P | |
| 20970 | R | SflSTLE4McrBP (100% identity) | Eco41C14McrB2P | |
| 20975 | DUF4942 domain-containing protein | |||