Escherichia fergusonii RHB41-C15 |
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Putative Escherichia fergusonii RHB41-C15 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,690,654 bp | CP056968 |
| plasmid pRHB41-C15_2: | 106,982 bp | CP056969 |
| plasmid pRHB41-C15_3: | 98,816 bp | CP056970 |
REBASE acronym: Efe41C15
Org_num: 43222
All begin HV010_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17390 | IS1 family transposase | |||
| 17395 | R | EfeC23ORF13600P (100% identity) | Efe41C15ORF17405P | |
| 17400 | S | S.Efe41C20ORF17415P (100% identity) | S.Efe41C15ORF17405P | |
| 17405 | M | M.Efe41C20ORF17415P (100% identity) | M.Efe41C15ORF17405P | |
| 17410 | IS1 family transposase | |||
| plasmid pRHB41-C15_2 | ||||
| 22745 | IS3 family transposase | |||
| 22750 | R | Efe41C20ORF22770P (100% identity) | Efe41C15ORF22765P | |
| 22755 | DUF4268 domain-containing protein | |||
| 22760 | S | S.Efe41C20ORF22770P (100% identity) | S.Efe41C15ORF22765P | |
| 22765 | M | M.Efe41C20ORF22770P (100% identity) | M.Efe41C15ORF22765P | |
| 22770 | SPFH/Band 7/PHB domain protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1360 | bifunctional isocitrate dehydrogenase | |||
| 1365 | M | M.Efe41C20ORF1365P (100% identity) | M.Efe41C15ORF1365P | |
| 1370 | glyoxylate bypass operon transcriptional | |||
| 1655 | PerC family transcriptional regulator | |||
| 1660 | M | M.Efe41C20ORF1660P (100% identity) | GATC | M.Efe41C15ORF1660P |
| 1665 | LexA family transcriptional regulator | |||
| 1695 | 67 aa hypothetical protein | |||
| 1700 | M | M.Sdy9764ORFEP (100% identity) | M.Efe41C15ORF1700P | |
| 1705 | phage lysis protein EssD | |||
| 3275 | helix-turn-helix domain-containing protein | |||
| 3280 | M | M.Sen24770ORF310P (100% identity) | GATC | M.Efe41C15ORF3280P |
| 3285 | RusA family crossover junction | |||
| 6605 | DUF1382 family protein | |||
| 6610 | M | M.Efe41C20ORF6615P (100% identity) | M.Efe41C15ORF6610P | |
| 6615 | PerC family transcriptional regulator | |||
| 8855 | recombination protein NinB | |||
| 8860 | M | M.SflN97ORF15810P (100% identity) | GATC | M.Efe41C15ORF8860P |
| 8865 | NinE family protein | |||
| 12650 | 150 aa hypothetical protein | |||
| 12655 | M | M.Efe41C20ORF12665P (100% identity) | M.Efe41C15ORF12655P | |
| 12660 | monooxygenase | |||
| 19900 | DNA-binding transcriptional regulator Fis | |||
| 19905 | M | M.Efe41C20ORF19910P (100% identity) | M.Efe41C15ORF19905P | |
| 19910 | DUF2556 family protein | |||
| 20425 | ribulose-phosphate 3-epimerase | |||
| 20430 | M | M.EfeTDamP (100% identity) | M.Efe41C15DamP | |
| 20435 | cell division protein DamX | |||
| plasmid pRHB41-C15_2 | ||||
| 23235 | 76 aa hypothetical protein | |||
| 23240 | M | M.SphSSU5ORF88P (96% identity) | M.Efe41C15ORF23240P | |
| 23245 | 290 aa hypothetical protein | |||
| plasmid pRHB41-C15_3 | ||||
| 23830 | SPFH/Band 7/PHB domain protein | |||
| 23845 | M | M.Sen9860ORF25540P (100% identity) | M.Efe41C15ORF23845P | |
| 23850 | recombination-associated protein RdgC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19225 | 100 aa hypothetical protein | |||
| 19230 | R | Efe41C20ORF19255BP (100% identity) | Efe41C15ORF19245BP | |
| 19235 | IS1 family transposase | |||
| 19240 | R | Efe41C20ORF19255AP (100% identity) | Efe41C15ORF19245AP | |
| 19245 | M | M.Efe41C20ORF19255P (100% identity) | M.Efe41C15ORF19245P | |
| 19250 | DEAD/DEAH box helicase family protein | |||