Citrobacter species RHBSTW-01013 |
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Putative Citrobacter species RHBSTW-01013 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,217,381 bp | CP056185 |
| plasmid pRHBSTW-01013_2: | 191,057 bp | CP056186 |
REBASE acronym: Csp1013
Org_num: 43006
All begin HV350_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 355 | 191 aa hypothetical protein | |||
| 360 | R | CfrF4321ORF14390P (100% identity) | Csp1013ORF365P | |
| 365 | M | M.CfrF4321ORF14390P (100% identity) | M.Csp1013ORF365P | |
| 370 | S | S.CfrF4321ORF14390P (90% identity) | S.Csp1013ORF365P | |
| 375 | 228 aa hypothetical protein | |||
| 3535 | IS5-like element ISKpn26 family transposase | |||
| 3540 | R | Ero309ORF20880P (100% identity) | Csp1013ORF3550P | |
| 3545 | S | S.Ero309ORF20880P (100% identity) | S.Csp1013ORF3550P | |
| 3550 | M | M.Ero309ORF20880P (100% identity) | M.Csp1013ORF3550P | |
| 3555 | restriction endonuclease subunit S | |||
| 10600 | IS1 family transposase | |||
| 10605 | S | S.Csp696ORF10650P (73% identity) | S.Csp1013ORF10605P | |
| 10610 | R | Csp696ORF10650P (100% identity) | Csp1013ORF10605P | |
| 10615 | M48 family metallopeptidase | |||
| 21135 | GTPase | |||
| 21140 | M | M.Csp696ORF21945P (100% identity) | M.Csp1013ORF21140P | |
| 21145 | S | S.Csp696ORF21945P (90% identity) | S.Csp1013ORF21140P | |
| 21150 | R | Csp696ORF21945P (100% identity) | Csp1013ORF21140P | |
| 21155 | endoribonuclease SymE | |||
| plasmid pRHBSTW-01013_2 | ||||
| 25960 | Tn3 family transposase | |||
| 25965 | M | M.SmaY426ORF10P (100% identity) | M.Csp1013ORF25965P | |
| 25970 | DUF1016 domain-containing protein | |||
| 25975 | restriction endonuclease subunit S | |||
| 25980 | R | SmaY426ORF10P (100% identity) | Csp1013ORF25965P | |
| 25985 | ISL3-like element ISSm4 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1940 | cell division protein DamX | |||
| 1945 | M | M.Eco9067DamP (100% identity) | GATC | M.Csp1013DamP |
| 1950 | ribulose-phosphate 3-epimerase | |||
| 2495 | DUF2556 family protein | |||
| 2500 | M | M.Csp696ORF2260P (100% identity) | ATGCAT | M.Csp1013ORF2500P |
| 2505 | DNA-binding transcriptional regulator Fis | |||
| 10335 | phosphohydrolase | |||
| 10340 | M | M.Csp696ORF10355P (100% identity) | CCWGG | M.Csp1013ORF10340P |
| 10345 | V | V.Csp696ORF10355P (100% identity) | V.Csp1013ORF10340P | |
| 10350 | drug/metabolite exporter YedA | |||
| 21330 | 149 aa hypothetical protein | |||
| 21335 | R | Csp696ORF22140P (100% identity) | Csp1013ORF21335P | |
| 21340 | helix-turn-helix transcriptional regulator | |||
| 21475 | DUF262 domain-containing protein | |||
| 21480 | RM | KspBL05ORF41950AP (100% identity) | Csp1013ORF21480AP | |
| 21485 | 154 aa hypothetical protein | |||
| 21490 | RNA-directed DNA polymerase | |||
| 21495 | IS3 family transposase | |||
| 21500 | Reverse transcriptase | |||
| ??? | RM | KspBL02ORF42510BP (99% identity) | Csp1013ORF21480BP | |
| 21515 | BREX-1 system phosphatase PglZ type A | |||
| 22890 | holin | |||
| 22895 | M | M.Csp859ORF23300P (100% identity) | M.Csp1013ORF22895P | |
| 22900 | TrmB family transcriptional regulator | |||
| 22920 | RusA family crossover junction | |||
| 22925 | M | M1.Cfr935ORF23000P (100% identity) | M1.Csp1013ORF22925P | |
| 22930 | M | M2.Cfr1443ORF24675P (100% identity) | M2.Csp1013ORF22925P | |
| 22935 | conserved phage C-terminal domain-containing | |||
| 23865 | phage portal protein | |||
| 23870 | M | M.Cfr658ORF22975P (97% identity) | M.Csp1013ORF23870P | |
| 23875 | 72 aa hypothetical protein | |||
| 23895 | 78 aa hypothetical protein | |||
| 23900 | M | M.Csp986ORF22700P (99% identity) | M.Csp1013ORF23900P | |
| 23905 | 130 aa hypothetical protein | |||
| plasmid pRHBSTW-01013_2 | ||||
| 25460 | 73 aa hypothetical protein | |||
| 25465 | M | M.EhoEhh24ORF24435P (100% identity) | M.Csp1013ORF25465P | |
| 25470 | 115 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10270 | prepilin cleavage protein | |||
| 10275 | R | Ero144ORF115P (97% identity) | CCGAG | Csp1013ORF10280P |
| 10280 | M | M.Cfr658ORF9535P (100% identity) | CCGAG | M.Csp1013ORF10280P |
| 10285 | SpnT protein | |||