Citrobacter species RHBSTW-00678 |
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Putative Citrobacter species RHBSTW-00678 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,178,534 bp | CP056350 |
| plasmid pRHBSTW-00678_2: | 304,626 bp | CP056351 |
REBASE acronym: Csp678
Org_num: 42674
All begin HV265_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13145 | M48 family metallopeptidase | |||
| 13150 | R | CfrNIH3IIIP (100% identity) | Csp678ORF13180P | |
| 13155 | cold shock domain-containing protein | |||
| 13160 | YecA family protein | |||
| 13165 | S | S.Kqu7BL08ORF11820P (14% identity) | S1.Csp678ORF13180P | |
| 13170 | IS5-like element IS5 family transposase | |||
| 13175 | S | S.Csp053ORF10830P (100% identity) | S2.Csp678ORF13180P | |
| 13180 | M | M.Csp053ORF10830P (100% identity) | M.Csp678ORF13180P | |
| 13185 | 391 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1725 | cell division protein DamX | |||
| 1730 | M | M.Eco9067DamP (100% identity) | GATC | M.Csp678DamP |
| 1735 | ribulose-phosphate 3-epimerase | |||
| 2285 | DUF2556 family protein | |||
| 2290 | M | M.Csp976ORF2290P (100% identity) | ATGCAT | M.Csp678ORF2290P |
| 2295 | tyrosine-type recombinase/integrase | |||
| 12005 | 921 aa hypothetical protein | |||
| 12010 | M | M.PdiESL4ORF7880P (100% identity) | M.Csp678ORF12010P | |
| 12015 | alpha/beta hydrolase | |||
| 12945 | 153 aa hypothetical protein | |||
| 12950 | M | M.Rel01CORF19105P (78% identity) | M.Csp678ORF12950P | |
| 12955 | 166 aa hypothetical protein | |||
| 13470 | drug/metabolite exporter YedA | |||
| 13475 | V | V.Eco9067ORF2227P (100% identity) | V.Csp678ORF13480P | |
| 13480 | M | M.CspTSA1ORF9545P (100% identity) | CCWGG | M.Csp678ORF13480P |
| 13485 | phosphohydrolase | |||
| 15880 | 3-5 exoribonuclease | |||
| 15885 | M | M.Lam1445ORF18780P (92% identity) | M1.Csp678ORF15885P | |
| 15890 | HNH endonuclease | |||
| 15895 | TraR/DksA C4-type zinc finger protein | |||
| 15900 | M | M.CpoC01ORF18790P (92% identity) | M2.Csp678ORF15885P | |
| 15905 | DUF4222 domain-containing protein | |||
| 17130 | antitermination protein | |||
| 17135 | M | M.Csp053ORF8255P (100% identity) | M.Csp678ORF17135P | |
| 17140 | recombination protein NinG | |||
| 22015 | 149 aa hypothetical protein | |||
| 22020 | R | Csp976ORF21300P (100% identity) | Csp678ORF22020P | |
| 22025 | toprim domain-containing protein | |||
| 23030 | 301 aa hypothetical protein | |||
| 23035 | R | Csp976ORF22390P (100% identity) | Csp678ORF23040P | |
| ??? | M | M.Csp976ORF22390P (100% identity) | M.Csp678ORF23040P | |
| 23045 | 86 aa hypothetical protein | |||
| plasmid pRHBSTW-00678_2 | ||||
| 25455 | 76 aa hypothetical protein | |||
| 25460 | M | M.Sen3039ORF24445P (100% identity) | M.Csp678ORF25460P | |
| 25465 | DNA polymerase III subunit beta | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3740 | DUF262 domain-containing protein | |||
| 3745 | R | Yen3502ORF950P (100% identity) | Csp678ORF3750P | |
| 3750 | M | M.Yen3502ORF950P (100% identity) | M.Csp678ORF3750P | |
| 3755 | DUF2130 domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21825 | BrnT family toxin | |||
| 21830 | R | CspC21MrrP (100% identity) | Csp678MrrP | |
| 21835 | 46 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3360 | 65 aa hypothetical protein | |||
| 3365 | M | M.StySopEDamP (12% identity) | M.Csp678ORF3365AP | |
| 3370 | IS5 family transposase | |||
| 3375 | M | M.Csp137ORF3375P (100% identity) | M.Csp678ORF3365BP | |
| 3380 | replication endonuclease | |||