Escherichia coli RHB38-C23 |
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Putative Escherichia coli RHB38-C23 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,798,964 bp | CP055608 |
| plasmid pRHB38-C23_2: | 199,443 bp | CP055609 |
| plasmid pRHB38-C23_3: | 110,891 bp | CP055610 |
| plasmid pRHB38-C23_4: | 88,719 bp | CP055611 |
| plasmid unnamed: | 31,388 bp | CP055612 |
REBASE acronym: Eco38C23
Org_num: 42147
All begin HVZ76_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3200 | endoribonuclease SymE | |||
| 3205 | S | S.Eco869RtORF17745P (62% identity) | S.Eco38C23ORF3210P | |
| 3210 | M | M.EcoHEC0005ORF11960P (100% identity) | M.Eco38C23ORF3210P | |
| 3215 | R | SspS13ORF3945P (99% identity) | Eco38C23ORF3210P | |
| 3220 | 289 aa hypothetical protein | |||
| 18135 | 98 aa hypothetical protein | |||
| 18140 | R | EcoEC521ORF29600P (99% identity) | Eco38C23ORF18150P | |
| 18145 | S | S.EcoEC521ORF29600P (99% identity) | S.Eco38C23ORF18150P | |
| 18150 | M | M.EcoEC521ORF29600P (100% identity) | M.Eco38C23ORF18150P | |
| 18155 | GTPase family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1585 | PerC family transcriptional regulator | |||
| 1590 | M | M.EcoS133I (100% identity) | GATC | M.Eco38C23ORF1590P |
| 1595 | LexA family transcriptional regulator | |||
| 1625 | 67 aa hypothetical protein | |||
| 1630 | M | M.EcoFu019ORF14885P (99% identity) | M.Eco38C23ORF1630P | |
| 1655 | holin | |||
| 14100 | drug/metabolite exporter YedA | |||
| 14105 | V | V.EcosEC7DcmP (100% identity) | V.Eco38C23DcmP | |
| 14110 | M | M.EcosEC5DcmP (100% identity) | CCWGG | M.Eco38C23DcmP |
| 14115 | phosphohydrolase | |||
| 17065 | PerC family transcriptional regulator | |||
| 17070 | M | M.PmeBin470ORFBP (99% identity) | M.Eco38C23ORF17070P | |
| 17075 | serine/threonine protein phosphatase | |||
| 17830 | replication endonuclease | |||
| 17835 | M | M.Sen24760ORF10410P (100% identity) | GATC | M.Eco38C23ORF17835P |
| 17840 | TraR/DksA family transcriptional regulator | |||
| 21765 | ribulose-phosphate 3-epimerase | |||
| 21770 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco38C23DamP |
| 21775 | cell division protein DamX | |||
| 23190 | PerC family transcriptional regulator | |||
| 23195 | M | M.EcosalpORF20815P (99% identity) | M.Eco38C23ORF23195P | |
| 23200 | DUF1382 family protein | |||
| plasmid pRHB38-C23_2 | ||||
| 24305 | glutamine--tRNA ligase | |||
| 24310 | M | M.Sen4474ORF24135P (100% identity) | M.Eco38C23ORF24310P | |
| 24315 | 226 aa hypothetical protein | |||
| plasmid pRHB38-C23_4 | ||||
| 25860 | 101 aa hypothetical protein | |||
| 25865 | M | M.Ssop356ORFAP (99% identity) | M.Eco38C23ORF25865P | |
| 25870 | 73 aa hypothetical protein | |||
| plasmid unnamed | ||||
| 26250 | 101 aa hypothetical protein | |||
| 26255 | M | M.SdyFF51ORF24515P (100% identity) | M.Eco38C23ORF26255P | |
| 26260 | 73 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pRHB38-C23_3 | ||||
| 25610 | 76 aa hypothetical protein | |||
| 25615 | M | M.Ecoppa6ORF24465P (100% identity) | M.Eco38C23ORF25615P | |
| 25620 | 269 aa hypothetical protein | |||