Escherichia coli RHB38-C13 |
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Putative Escherichia coli RHB38-C13 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,252,206 bp | CP055624 |
| plasmid pRHB38-C13_2: | 119,408 bp | CP055625 |
| plasmid pRHB38-C13_3: | 94,171 bp | CP055626 |
| plasmid pRHB38-C13_4: | 92,689 bp | CP055627 |
REBASE acronym: Eco38C13
Org_num: 42146
All begin HVZ71_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3585 | restriction endonuclease subunit S | |||
| 3590 | M | M.EcoZ147ORF19115P (87% identity) | M.Eco38C13ORF3590P | |
| 3595 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2035 | cell division protein DamX | |||
| 2040 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco38C13DamP |
| 2045 | ribulose-phosphate 3-epimerase | |||
| 2550 | DUF2556 family protein | |||
| 2555 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Eco38C13ORF2555P |
| 2560 | DNA-binding transcriptional regulator Fis | |||
| 3655 | DEAD/DEAH box helicase | |||
| 3660 | RM | SflLIN17ORF3140P (100% identity) | Eco38C13ORF3660P | |
| 3665 | transposase | |||
| 6015 | adhesin-like autotransporter YpjA/EhaD | |||
| 6020 | R | Sens24184ORF5380P (100% identity) | C | Eco38C13ORF6020P |
| 6025 | DNA primase | |||
| 6655 | serine/threonine protein phosphatase | |||
| 6660 | M | M.EfeC13ORF6305P (100% identity) | M.Eco38C13ORF6660P | |
| 6665 | PerC family transcriptional regulator | |||
| 7720 | recombination protein NinB | |||
| 7725 | M | M.Efe65411ORF13820P (100% identity) | GATC | M.Eco38C13ORF7725P |
| 7730 | NinE family protein | |||
| 9990 | phosphohydrolase | |||
| 9995 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.Eco38C13DcmP |
| 10000 | V | V.SsoSE61DcmP (100% identity) | V.Eco38C13DcmP | |
| 10005 | drug/metabolite exporter YedA | |||
| 17025 | NinE family protein | |||
| 17030 | M | M.Efe65411ORF13820P (100% identity) | GATC | M.Eco38C13ORF17030P |
| 17035 | recombination protein NinB | |||
| 22030 | IS3 family transposase | |||
| 22035 | M | M.EcoSE11DndBP (100% identity) | M.Eco38C13DndBP | |
| 22040 | DNA phosphorothioation system sulfurtransferase | |||
| 22035 | DNA sulfur modification protein DndB | |||
| 22040 | M | M.EcoSE11DndCP (100% identity) | M.Eco38C13DndCP | |
| 22045 | DNA sulfur modification protein DndD | |||
| 22040 | DNA phosphorothioation system sulfurtransferase | |||
| 22045 | M | M.EcoMc31DndDP (100% identity) | M.Eco38C13DndDP | |
| 22050 | DNA sulfur modification protein DndE | |||
| 22045 | DNA sulfur modification protein DndD | |||
| 22050 | M | M.EcoSE11DndEP (100% identity) | M.Eco38C13DndEP | |
| 22055 | 206 aa hypothetical protein | |||
| 22060 | restriction endonuclease | |||
| 22065 | R | EcoMc31DptHP (100% identity) | Eco38C13DptHP | |
| 22070 | DNA phosphorothioation-dependent restriction | |||
| 22065 | DNA phosphorothioation-dependent restriction | |||
| 22070 | R | EcoMc31DptGP (100% identity) | Eco38C13DptGP | |
| 22075 | DNA phosphorothioation-dependent restriction | |||
| 22070 | DNA phosphorothioation-dependent restriction | |||
| 22075 | R | EcoSE11DptFP (99% identity) | Eco38C13DptFP | |
| 22080 | DUF4102 domain-containing protein | |||
| 23360 | tellurite resistance TerB family protein | |||
| 23375 | M | M.EcoEC416ORF46640P (99% identity) | M.Eco38C13ORF23375P | |
| 23380 | 67 aa hypothetical protein | |||
| plasmid pRHB38-C13_2 | ||||
| 25680 | IS110 family transposase | |||
| 25685 | M | M.EcoE1728ORF3005P (100% identity) | M.Eco38C13ORF25685P | |
| 25690 | 73 aa hypothetical protein | |||
| plasmid pRHB38-C13_3 | ||||
| 26385 | glutamine--tRNA ligase | |||
| 26390 | M | M.SenYU39ORF5083P (100% identity) | M.Eco38C13ORF26390P | |
| 26395 | 226 aa hypothetical protein | |||
| plasmid pRHB38-C13_4 | ||||
| 26915 | 101 aa hypothetical protein | |||
| 26920 | M | M.EcoEC416ORF1200P (100% identity) | M.Eco38C13ORF26920P | |
| 26925 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21845 | endoribonuclease SymE | |||
| 21850 | R | EcoXH990GmrSDP (100% identity) | Eco38C13GmrSDP | |
| 21855 | DUF1127 domain-containing protein | |||
| 22055 | 206 aa hypothetical protein | |||
| 22060 | R | EcoSE11MrrP (100% identity) | Eco38C13MrrP | |