Escherichia coli RHB32-C08 |
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Putative Escherichia coli RHB32-C08 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,878,382 bp | CP055652 |
| plasmid unnamed: | 11,835 bp | CP055656 |
REBASE acronym: Eco3208
Org_num: 42143
All begin HVY99_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20550 | DUF4942 domain-containing protein | |||
| 20555 | M | M.SsoSE61ORF6540P (57% identity) | M.Eco3208ORF20555AP | |
| 20560 | IS3-like element IS2 family transposase | |||
| 20565 | M | M.Sen775WIII (42% identity) | M.Eco3208ORF20555BP | |
| ??? | S | S.EcoO111ORFAP (59% identity) | S1.Eco3208ORF20555P | |
| 20575 | S | S.EcoWI2ORF3972P (39% identity) | S2.Eco3208ORF20555P | |
| 20580 | R | EcoS7005ORFFP (100% identity) | Eco3208ORF20555P | |
| 20585 | 52 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1605 | cell division protein DamX | |||
| 1610 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco3208DamP |
| 1615 | ribulose-phosphate 3-epimerase | |||
| 2210 | 73 aa hypothetical protein | |||
| 2215 | M | M.Eco9037ORF700P (100% identity) | M.Eco3208ORF2215P | |
| 2220 | DNA-binding transcriptional regulator Fis | |||
| 9025 | phosphohydrolase | |||
| 9030 | M | M.EcosEC29DcmP (100% identity) | CCWGG | M.Eco3208DcmP |
| 9035 | V | V.SflFF64DcmP (100% identity) | V.Eco3208DcmP | |
| 9040 | drug/metabolite exporter YedA | |||
| 9600 | TrmB family transcriptional regulator | |||
| 9605 | M | M.Eco42C20ORF9560P (100% identity) | M.Eco3208ORF9605P | |
| 9615 | holin | |||
| 9680 | tail fiber assembly protein | |||
| 9685 | M | M.Eco42C20ORF9710P (100% identity) | M.Eco3208ORF9685P | |
| 9690 | R | Sso8033ORF3755P (100% identity) | Eco3208ORF9685P | |
| 9695 | hydrolase | |||
| 13125 | holin | |||
| 13135 | M | M.EcoDEC11BORF2202P (54% identity) | M.Eco3208ORF13135P | |
| 13140 | TrmB family transcriptional regulator | |||
| 15680 | 273 aa hypothetical protein | |||
| 15685 | M | M.EcoSP4ORF9640P (98% identity) | M.Eco3208ORF15685P | |
| 15690 | TraR/DksA family transcriptional regulator | |||
| 20515 | HNH endonuclease | |||
| 20520 | R | SflSTLE4ORF19250P (100% identity) | Eco3208ORF20520P | |
| 20525 | McrC family protein | |||
| 21415 | 62 aa hypothetical protein | |||
| 21420 | M | M.EcoC1747ORF4185P (100% identity) | CTGAAG | M.Eco3208ORF21420P |
| 21425 | RM | Efe41C23ORF15565P (100% identity) | CTGAAG | Eco3208ORF21420P |
| 21430 | type I restriction-modification system subunit M | |||
| plasmid unnamed | ||||
| 24505 | 103 aa hypothetical protein | |||
| 24510 | M | M.Sfl60ORF25670P (100% identity) | SAY | M.Eco3208ORF24510P |
| 24515 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20520 | HNH endonuclease | |||
| 20525 | R | SflSTLE4McrCP (100% identity) | Eco3208McrC2P | |
| 20530 | R | SflSTLE4McrBP (100% identity) | Eco3208McrB2P | |
| 20535 | DUF4942 domain-containing protein | |||
| 21430 | type I restriction-modification system subunit M | |||
| 21435 | R | EcoC9969McrCP (100% identity) | Eco3208McrCP | |
| 21440 | R | EcoC1747McrB2P (100% identity) | Eco3208McrBP | |
| 21445 | IS21 family transposase | |||