Escherichia coli RHB31-C08 |
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Putative Escherichia coli RHB31-C08 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,791,502 bp | CP055660 |
| plasmid pRHB31-C08_3: | 109,977 bp | CP055662 |
| plasmid pRHB31-C08_4: | 94,842 bp | CP055663 |
| plasmid unnamed: | 161,548 bp | CP055661 |
REBASE acronym: Eco31C08
Org_num: 42142
All begin HVY86_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5350 | M48 family metallopeptidase | |||
| 5355 | R | EcoLR171ORF18030P (100% identity) | Eco31C08ORF5375P | |
| 5360 | cold shock domain-containing protein | |||
| 5365 | YecA family protein | |||
| 5370 | S | S.EcoLR171ORF18030P (100% identity) | S.Eco31C08ORF5375P | |
| 5375 | M | M.EcoYPE12ORF11395P (100% identity) | M.Eco31C08ORF5375P | |
| 5380 | 388 aa hypothetical protein | |||
| 17960 | endoribonuclease SymE | |||
| 17965 | R | SflSTLE3ORF19325P (100% identity) | Eco31C08ORF17975P | |
| 17970 | S | S.SflSTLE3ORF19325P (100% identity) | S.Eco31C08ORF17975P | |
| 17975 | M | M.EcoS88ORF4968P (20% identity) | M.Eco31C08ORF17975BP | |
| 17980 | IS3-like element IS3 family transposase | |||
| 17985 | M | M.EcoS88ORF4968P (79% identity) | M.Eco31C08ORF17975AP | |
| 17990 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5720 | drug/metabolite exporter YedA | |||
| 5725 | V | V.EcosPA11DcmP (100% identity) | V.Eco31C08DcmP | |
| 5730 | M | M.EcosPA11DcmP (100% identity) | CCWGG | M.Eco31C08DcmP |
| 5735 | phosphohydrolase | |||
| 12075 | DNA-binding transcriptional regulator Fis | |||
| 12080 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco31C08ORF12080P |
| 12085 | DUF2556 family protein | |||
| 12700 | ribulose-phosphate 3-epimerase | |||
| 12705 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco31C08DamP |
| 12710 | cell division protein DamX | |||
| 17245 | porin family protein | |||
| 17250 | R | SflFF24DptFP (100% identity) | Eco31C08DptFP | |
| 17255 | DNA phosphorothioation-dependent restriction | |||
| 17250 | DNA phosphorothioation-dependent restriction | |||
| 17255 | R | SflFF24DptGP (100% identity) | Eco31C08DptGP | |
| 17260 | DNA phosphorothioation-dependent restriction | |||
| 17255 | DNA phosphorothioation-dependent restriction | |||
| 17260 | R | EcosEC5DptHP (99% identity) | Eco31C08DptHP | |
| 17265 | accessory gene regulator B family protein | |||
| 17275 | DGQHR domain-containing protein | |||
| 17280 | M | M.SflFF24DndEP (100% identity) | M.Eco31C08DndEP | |
| 17285 | DNA sulfur modification protein DndD | |||
| 17280 | DNA sulfur modification protein DndE | |||
| 17285 | M | M.SflFF24DndDP (100% identity) | M.Eco31C08DndDP | |
| 17290 | DNA phosphorothioation system sulfurtransferase | |||
| 17285 | DNA sulfur modification protein DndD | |||
| 17290 | M | M.SflFF24DndCP (100% identity) | M.Eco31C08DndCP | |
| 17295 | DNA sulfur modification protein DndB | |||
| 17290 | DNA phosphorothioation system sulfurtransferase | |||
| 17295 | M | M.SflFF24DndBP (100% identity) | M.Eco31C08DndBP | |
| 17300 | osmoprotectant transport activator ProQ | |||
| plasmid pRHB31-C08_4 | ||||
| 24790 | tellurite resistance TerB family protein | |||
| 24805 | M | M.EcoLc41ORF24240P (98% identity) | M.Eco31C08ORF24805P | |
| 24810 | recombination-associated protein RdgC | |||
| plasmid unnamed | ||||
| 22900 | thermonuclease family protein | |||
| 22905 | M | M.Sens770ORF21675P (100% identity) | M.Eco31C08ORF22905P | |
| 22910 | 56 aa hypothetical protein | |||
| 23450 | 273 aa hypothetical protein | |||
| 23455 | M | M.Ype21801ORF197P (100% identity) | M.Eco31C08ORF23455P | |
| 23460 | DNA-binding protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pRHB31-C08_3 | ||||
| 24225 | 76 aa hypothetical protein | |||
| 24230 | M | M.Sso524ORF460P (100% identity) | M.Eco31C08ORF24230P | |
| 24235 | 269 aa hypothetical protein | |||