Escherichia fergusonii RHB28-C13 |
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Putative Escherichia fergusonii RHB28-C13 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,718,083 bp | CP055675 |
| plasmid pRHB28-C13_2: | 282,651 bp | CP055676 |
| plasmid pRHB28-C13_3: | 94,009 bp | CP055677 |
| plasmid unnamed: | 47,010 bp | CP055678 |
REBASE acronym: EfeC13
Org_num: 42156
All begin HVY52_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19325 | Fic family protein | |||
| 19330 | R | EfeC18ORF18420P (100% identity) | EfeC13ORF19335P | |
| 19335 | M | M.EfeC18ORF18420P (100% identity) | M.EfeC13ORF19335P | |
| 19340 | S | S.EfeC18ORF18420P (100% identity) | S.EfeC13ORF19335P | |
| 19345 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1200 | bifunctional isocitrate dehydrogenase | |||
| 1205 | M | M.EfeC18ORF680P (100% identity) | M.EfeC13ORF1205P | |
| 1210 | glyoxylate bypass operon transcriptional | |||
| 2945 | helix-turn-helix domain-containing protein | |||
| 2950 | M | M.Sen24770ORF310P (99% identity) | GATC | M.EfeC13ORF2950P |
| 2955 | RusA family crossover junction | |||
| 6300 | serine/threonine protein phosphatase | |||
| 6305 | M | M.Eco38C13ORF6660P (100% identity) | M.EfeC13ORF6305P | |
| 6310 | PerC family transcriptional regulator | |||
| 8140 | TraR/DksA family transcriptional regulator | |||
| 8145 | M | M.EcoDEC14DORF1005P (100% identity) | M.EfeC13ORF8145P | |
| 8150 | 273 aa hypothetical protein | |||
| 14685 | DUF1317 family protein | |||
| 14690 | M | M.Efe42C24ORF15925P (100% identity) | M.EfeC13ORF14690P | |
| 14695 | 93 aa hypothetical protein | |||
| 17585 | phage holin, lambda family | |||
| 17590 | M | M.Eco5L11ORF34340P (99% identity) | M.EfeC13ORF17590P | |
| 17595 | TrmB family transcriptional regulator | |||
| 17625 | LexA family transcriptional regulator | |||
| 17630 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EfeC13ORF17630P |
| 17635 | PerC family transcriptional regulator | |||
| 20115 | DNA-binding transcriptional regulator Fis | |||
| 20120 | M | M.EfeC18ORF19205P (100% identity) | M.EfeC13ORF20120P | |
| 20125 | DUF2556 family protein | |||
| 20640 | ribulose-phosphate 3-epimerase | |||
| 20645 | M | M.EfeTDamP (100% identity) | M.EfeC13DamP | |
| 20650 | cell division protein DamX | |||
| plasmid pRHB28-C13_2 | ||||
| 23575 | 55 aa hypothetical protein | |||
| 23580 | M | M.YpsF1ORFCP (100% identity) | M.EfeC13ORF23580P | |
| 23585 | thermonuclease family protein | |||
| 24035 | 48 aa hypothetical protein | |||
| 24040 | M | M.YpsF1ORFBP (100% identity) | M.EfeC13ORF24040P | |
| 24045 | 202 aa hypothetical protein | |||
| 24230 | DNA-binding protein | |||
| 24235 | M | M.SenBL10ORFDP (100% identity) | M.EfeC13ORF24235P | |
| 24240 | 284 aa hypothetical protein | |||
| plasmid pRHB28-C13_3 | ||||
| 24745 | tellurite/colicin resistance protein | |||
| 24760 | M | M.Ecoa5ORF8945P (100% identity) | M.EfeC13ORF24760P | |
| 24765 | recombination-associated protein RdgC | |||
| plasmid unnamed | ||||
| 24945 | 90 aa hypothetical protein | |||
| 24950 | M | M.EcoPnTigORFFP (93% identity) | M.EfeC13ORF24950P | |
| 24955 | 75 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17410 | DUF4113 domain-containing protein | |||
| 17415 | R | Ecop10BGmrSDP (99% identity) | EfeC13GmrSDP | |
| 17420 | recombinase family protein | |||
| 19345 | endoribonuclease SymE | |||
| 19350 | R | EfeTMcrBP (100% identity) | EfeC13McrBP | |
| 19355 | R | EfeMcrCP (100% identity) | EfeC13McrCP | |