Escherichia coli RHB13-C14 |
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Putative Escherichia coli RHB13-C14 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,006,643 bp | CP055724 |
| plasmid pRHB13-C14_2: | 92,722 bp | CP055725 |
| plasmid pRHB13-C14_7: | 4,286 bp | CP055730 |
REBASE acronym: Eco13C14
Org_num: 42137
All begin HVW81_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11170 | 322 aa hypothetical protein | |||
| 11175 | R | EcoSCU171ORF17935P (100% identity) | RTCANNNNNNNNRTRTC | Eco13C14ORF11180P |
| 11180 | M | M.Sdy49345I (97% identity) | RTCANNNNNNNNRTRTC | M.Eco13C14ORF11180P |
| 11185 | S | S.EcoSCU171ORF17935P (100% identity) | RTCANNNNNNNNRTRTC | S.Eco13C14ORF11180P |
| 11190 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3590 | cell envelope integrity protein TolA | |||
| 3605 | M | M.EcoTob1ORF18280P (100% identity) | M.Eco13C14ORF3605P | |
| 3610 | TrmB family transcriptional regulator | |||
| 11370 | HNH endonuclease | |||
| 11375 | R | SflFF17ORF19275P (100% identity) | Eco13C14ORF11375P | |
| 11380 | 59 aa hypothetical protein | |||
| 11500 | AAA family ATPase | |||
| 11505 | RM | EcoSCU171ORF17610P (100% identity) | Eco13C14ORF11505P | |
| 11510 | BREX system P-loop protein BrxC | |||
| 16260 | cell division protein DamX | |||
| 16265 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco13C14DamP |
| 16270 | ribulose-phosphate 3-epimerase | |||
| 16860 | DUF2556 family protein | |||
| 16865 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.Eco13C14ORF16865P |
| 16870 | DNA-binding transcriptional regulator Fis | |||
| 18975 | IS66 family insertion sequence element accessory | |||
| 18980 | R | EcoR9ORF18300P (99% identity) | Eco13C14ORF18985P | |
| 18985 | M | M.Eco3121ORFPP (99% identity) | M.Eco13C14ORF18985P | |
| 18990 | CcdB family protein | |||
| 19000 | urease subunit beta | |||
| 19005 | RM | EcoR43ORF19470P (100% identity) | Eco13C14ORF19005P | |
| ??? | S | S.EcoR43ORF19470P (100% identity) | S.Eco13C14ORF19005P | |
| 19020 | complement resistance protein TraT | |||
| 24060 | phosphohydrolase | |||
| 24065 | M | M.EcoS792DcmP (100% identity) | CCWGG | M.Eco13C14DcmP |
| 24070 | V | V.SflC32DcmP (74% identity) | V.Eco13C14DcmP | |
| 24075 | drug/metabolite exporter YedA | |||
| 24595 | PerC family transcriptional regulator | |||
| 24600 | M | M.EcoCP55ORF24105P (100% identity) | GATC | M.Eco13C14ORF24600P |
| 24605 | LexA family transcriptional regulator | |||
| plasmid pRHB13-C14_2 | ||||
| 24885 | IS110-like element ISShdy1 family transposase | |||
| 24890 | M | M.Ecos135ORF27020P (100% identity) | SAY | M.Eco13C14ORF24890P |
| 24895 | 73 aa hypothetical protein | |||
| plasmid pRHB13-C14_7 | ||||
| 25715 | M | M.Efe33C07ORF24365P (100% identity) | M.Eco13C14ORF25715P | |
| 25720 | R | Efe33C07ORF24365P (100% identity) | Eco13C14ORF25715P | |
| 25725 | Rop family plasmid primer RNA-binding protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19090 | DUF1281 domain-containing protein | |||
| 19095 | R | Eco3121ORFBP (99% identity) | Eco13C14ORF19100P | |
| 19100 | M | M.Eco3121ORFBP (99% identity) | M.Eco13C14ORF19100P | |
| 19105 | IS3 family transposase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5945 | 3-5 exoribonuclease | |||
| 5950 | M | M.EcoT34ORF21775P (94% identity) | M.Eco13C14ORF5950P | |
| 5955 | 81 aa hypothetical protein | |||