Escherichia fergusonii RHB03-C23 |
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Putative Escherichia fergusonii RHB03-C23 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
Complete sequence: 4,759,039 bp
GenBank #: CP055806
REBASE acronym: EfeC23
Org_num: 42154
All begin HVV65_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 13595 | GTPase family protein | |||
| 13600 | M | M.Efe38C01ORF7960P (99% identity) | M.EfeC23ORF13600P | |
| 13605 | S | S.EcoO127ORF4610P (63% identity) | S.EfeC23ORF13600P | |
| 13610 | R | Efe65411ORF17490P (100% identity) | EfeC23ORF13600P | |
| 13615 | IS1 family transposase | |||
| 19210 | Fic family protein | |||
| 19215 | R | EfeEF02ORF206830P (100% identity) | EfeC23ORF19220P | |
| 19220 | M | M.EfeEF02ORF206830P (100% identity) | M.EfeC23ORF19220P | |
| 19225 | S | S.EfeEF02ORF206830P (100% identity) | S.EfeC23ORF19220P | |
| 19230 | endoribonuclease SymE | |||
| 19315 | DUF4942 domain-containing protein | |||
| 19320 | M | M.EfeEF02ORF206740P (85% identity) | M.EfeC23ORF19320P | |
| 19325 | S | S.EfeEF02ORF206740P (100% identity) | S.EfeC23ORF19320P | |
| 19330 | R | EfeEF02ORF206740P (31% identity) | EfeC23ORF19320AP | |
| 19335 | IS4-like element ISVsa5 family transposase | |||
| 19340 | R | EfeEF02ORF206740P (69% identity) | EfeC23ORF19320BP | |
| 19350 | NADPH-dependent aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1350 | bifunctional isocitrate dehydrogenase | |||
| 1355 | M | M.EfeEF02ORF209655P (97% identity) | M.EfeC23ORF1355P | |
| 1360 | glyoxylate bypass operon transcriptional | |||
| 5750 | PerC family transcriptional regulator | |||
| 5755 | M | M.Eco10957ORF1689P (100% identity) | GATC | M.EfeC23ORF5755P |
| 5760 | LexA family transcriptional regulator | |||
| 5785 | TrmB family transcriptional regulator | |||
| 5790 | M | M.Ecoppa4ORF26465P (100% identity) | M.EfeC23ORF5790P | |
| 5795 | phage holin, lambda family | |||
| 6935 | DUF1382 family protein | |||
| 6940 | M | M.EcoPnTigORFJP (100% identity) | M.EfeC23ORF6940P | |
| 6945 | PerC family transcriptional regulator | |||
| 8895 | TraR/DksA family transcriptional regulator | |||
| 8900 | M | M.EcoLR181ORF20520P (100% identity) | GATC | M.EfeC23ORF8900P |
| 8905 | replication endonuclease | |||
| 18745 | transposase | |||
| 18750 | RM | SflLIN17ORF3140P (100% identity) | EfeC23ORF18750P | |
| 18755 | DEAD/DEAH box helicase | |||
| 19295 | HNH endonuclease | |||
| 19300 | R | Efe42C24ORF17920P (99% identity) | EfeC23ORF19300P | |
| 19305 | McrC family protein | |||
| 19985 | DNA-binding transcriptional regulator Fis | |||
| 19990 | M | M.EfeTORF37040P (100% identity) | M.EfeC23ORF19990P | |
| 19995 | DUF2556 family protein | |||
| 20510 | ribulose-phosphate 3-epimerase | |||
| 20515 | M | M.EfeTDamP (100% identity) | M.EfeC23DamP | |
| 20520 | cell division protein DamX | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19230 | endoribonuclease SymE | |||
| 19235 | R | EfeTMcrBP (100% identity) | EfeC23McrB2P | |
| 19240 | R | EfeMcrCP (100% identity) | EfeC23McrC2P | |
| 19300 | HNH endonuclease | |||
| 19305 | R | EfeEF02McrC2P (100% identity) | EfeC23McrCP | |
| 19310 | R | EfeEF02McrB2P (100% identity) | EfeC23McrBP | |
| 19315 | DUF4942 domain-containing protein | |||