Escherichia coli RHB03-C22 |
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Putative Escherichia coli RHB03-C22 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,872,128 bp | CP055818 |
| plasmid pRHB03-C22_2: | 94,956 bp | CP055819 |
| plasmid pRHB03-C22_3: | 89,222 bp | CP055820 |
| plasmid pRHB03-C22_4: | 50,996 bp | CP055821 |
| plasmid unnamed: | 46,562 bp | CP055822 |
REBASE acronym: Eco03C22
Org_num: 42129
All begin HVV64_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5695 | IS1 family transposase | |||
| 5700 | R | Ror24150ORF17255P (100% identity) | GGANNNNNCTC | Eco03C22ORF5710P |
| 5705 | S | S.Eco41C14ORF5730P (100% identity) | GGANNNNNCTC | S.Eco03C22ORF5710P |
| 5710 | M | M.Eco41C14ORF5730BP (100% identity) | GGANNNNNCTC | M.Eco03C22ORF5710BP |
| 5715 | IS3-like element IS3 family transposase | |||
| 5720 | M | M.Eco41C14ORF5730AP (100% identity) | GGANNNNNCTC | M.Eco03C22ORF5710AP |
| 5725 | IS1 family transposase | |||
| 9745 | IS1 family transposase | |||
| 9750 | R | SflN97ORF14060P (100% identity) | Eco03C22ORF9760P | |
| 9755 | S | S.SflN97ORF14060P (100% identity) | S.Eco03C22ORF9760P | |
| 9760 | M | M.SflN97ORF14060P (100% identity) | M.Eco03C22ORF9760P | |
| 9765 | GTPase family protein | |||
| 20745 | 322 aa hypothetical protein | |||
| 20750 | R | SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | Eco03C22ORF20755P |
| 20755 | M | M.SspS13ORF3945P (40% identity) | RTCANNNNNNNNGTGG | M.Eco03C22ORF20755AP |
| 20760 | IS3-like element IS3 family transposase | |||
| 20765 | M | M.SspS13ORF3945P (59% identity) | RTCANNNNNNNNGTGG | M.Eco03C22ORF20755BP |
| 20770 | S | S.SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | S.Eco03C22ORF20755P |
| 20775 | endoribonuclease SymE | |||
| 20975 | restriction endonuclease subunit M | |||
| 20980 | M | M.Eco41C14ORF20990P (100% identity) | M.Eco03C22ORF20980P | |
| 20985 | S | S.Eco41C14ORF20990P (100% identity) | S.Eco03C22ORF20980P | |
| 20990 | R | SspS13ORF3745P (100% identity) | Eco03C22ORF20980P | |
| 21000 | NADPH-dependent aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1605 | cell division protein DamX | |||
| 1610 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco03C22DamP |
| 1615 | ribulose-phosphate 3-epimerase | |||
| 2230 | DUF2556 family protein | |||
| 2235 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco03C22ORF2235P |
| 2240 | DNA-binding transcriptional regulator Fis | |||
| 5790 | TraR/DksA family transcriptional regulator | |||
| 5795 | M | M.Eco41C14ORF5815P (100% identity) | M.Eco03C22ORF5795P | |
| 5800 | replication endonuclease | |||
| 5950 | IS4-like element ISVsa5 family transposase | |||
| 5955 | M | M.Ecoi64ORF2425P (100% identity) | M.Eco03C22ORF5955P | |
| 5960 | AAA family ATPase | |||
| 6035 | 67 aa hypothetical protein | |||
| 6040 | M | M.Sso63633ORF22290P (100% identity) | M.Eco03C22ORF6040P | |
| 6045 | phage lysis protein EssD | |||
| 14815 | drug/metabolite exporter YedA | |||
| 14820 | V | V.SsoSE61DcmP (100% identity) | V.Eco03C22DcmP | |
| 14825 | M | M.EcoCP61DcmP (100% identity) | CCWGG | M.Eco03C22DcmP |
| 14830 | phosphohydrolase | |||
| 18890 | DUF1317 family protein | |||
| 18895 | M | M.Eco41C14ORF18905P (100% identity) | M.Eco03C22ORF18895P | |
| 18900 | 93 aa hypothetical protein | |||
| 20470 | phage minor tail protein L | |||
| 20475 | M | M.SflN101ORF11410P (100% identity) | GATC | M.Eco03C22ORF20475P |
| 20480 | PerC family transcriptional regulator | |||
| 20945 | HNH endonuclease | |||
| 20950 | R | SflFF17ORF19275P (100% identity) | Eco03C22ORF20950P | |
| 20955 | McrC family protein | |||
| plasmid pRHB03-C22_2 | ||||
| 24195 | 73 aa hypothetical protein | |||
| 24200 | M | M.SdyFF51ORF24515P (100% identity) | M.Eco03C22ORF24185P | |
| 24205 | 101 aa hypothetical protein | |||
| plasmid pRHB03-C22_3 | ||||
| 24505 | 103 aa hypothetical protein | |||
| 24510 | M | M.Sen1357ORF24335P (100% identity) | M.Eco03C22ORF24510P | |
| 24515 | 73 aa hypothetical protein | |||
| plasmid pRHB03-C22_4 | ||||
| 24885 | recombinase family protein | |||
| 24890 | R | Ssp3CORF24390P (100% identity) | CCWGG | Eco03C22ORF24895P |
| 24895 | M | M.SflSTLE4ORF22820P (100% identity) | CCWGG | M.Eco03C22ORF24895P |
| 24900 | IS1 family transposase | |||
| plasmid unnamed | ||||
| 25360 | 103 aa hypothetical protein | |||
| 25365 | M | M.SflC32ORFDP (100% identity) | SAY | M.Eco03C22ORF25365P |
| 25370 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9575 | 141 aa hypothetical protein | |||
| 9580 | R | SflN97McrBP (100% identity) | Eco03C22McrBP | |
| 9585 | R | SflN97McrCP (100% identity) | Eco03C22McrCP | |
| 9590 | IS5 family transposase | |||
| 20950 | HNH endonuclease | |||
| 20955 | R | SflFF17McrCP (100% identity) | Eco03C22McrC2P | |
| 20960 | R | SflSTLE4McrBP (100% identity) | Eco03C22McrB2P | |
| 20965 | DUF4942 domain-containing protein | |||