Acidithiobacillus ferrooxidans YNTRS-40 |
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Putative Acidithiobacillus ferrooxidans YNTRS-40 RM systems
Ref: Yan,L. and Zhang,Y. unpublished
REBASE ref # 30908
Complete sequence: 3,209,933 bp
GenBank #: CP040511
REBASE acronym: Afe40
Org_num: 41929
All begin FE661_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3195 | 226 aa hypothetical protein | |||
| 3200 | R | AfeBYMORF3215P (100% identity) | Afe40ORF3220P | |
| 3205 | 260 aa hypothetical protein | |||
| 3210 | S | S.AfeBYMORF3215P (100% identity) | S.Afe40ORF3220P | |
| 3215 | FRG domain-containing protein | |||
| 3220 | M | M.AfeBYMORF3215BP (100% identity) | M.Afe40ORF3220P | |
| 3225 | 276 aa hypothetical protein | |||
| 3765 | YbjQ family protein | |||
| 3770 | R | AfeBYMORF3775P (100% identity) | Afe40ORF3780P | |
| 3775 | KilA-N domain-containing protein | |||
| 3780 | M | M.AfeBYMORF3775P (100% identity) | M.Afe40ORF3780P | |
| 3785 | 606 aa hypothetical protein | |||
| 4275 | type I restriction endonuclease subunit R | |||
| 4280 | R | AfeYQN3ORF3730P (100% identity) | Afe40ORF4285P | |
| 4285 | M | M.AfeYQN3ORF3730P (100% identity) | M.Afe40ORF4285P | |
| 4290 | Fic/DOC family protein | |||
| 4295 | S | S.Asp221ORFSP (62% identity) | S.Afe40ORF4285P | |
| 4305 | 67 aa hypothetical protein | |||
| 4950 | 89 aa hypothetical protein | |||
| 4955 | M | M.AfeYQN3ORF4390P (100% identity) | M.Afe40ORF4955P | |
| 4960 | DUF4062 domain-containing protein | |||
| 4965 | virulence RhuM family protein | |||
| 4970 | S | S.AfeBYMORF4935P (100% identity) | S.Afe40ORF4955P | |
| 4975 | 937 aa hypothetical protein | |||
| 4980 | R | AfeYQN3ORF4390P (100% identity) | Afe40ORF4955P | |
| 4985 | M48 family metallopeptidase | |||
| 11760 | ribonuclease HI | |||
| 11765 | M | M.AthLicORFOP (89% identity) | M.Afe40ORF11765P | |
| 11770 | type II toxin-antitoxin system VapC family | |||
| 11775 | 76 aa hypothetical protein | |||
| 11780 | 67 aa hypothetical protein | |||
| 11785 | Zeta toxin family protein | |||
| 11790 | S | S.AthLicORFOP (100% identity) | S.Afe40ORF11765P | |
| 11795 | type II toxin-antitoxin system VapC family | |||
| 11800 | 89 aa hypothetical protein | |||
| 11805 | R | AfeBYMORF11715P (100% identity) | Afe40ORF11765P | |
| 11810 | 172 aa hypothetical protein | |||
| 11925 | transposase | |||
| 11930 | M | M.AfeYQN3ORF10580P (100% identity) | M.Afe40ORF11930P | |
| 11935 | 67 aa hypothetical protein | |||
| 11940 | anticodon nuclease | |||
| 11945 | restriction endonuclease subunit S | |||
| 11950 | DEAD/DEAH box helicase | |||
| 11955 | 262 aa hypothetical protein | |||
| 11960 | S | S.AfeYQN3ORF10580P (100% identity) | S.Afe40ORF11930P | |
| 11965 | 100 aa hypothetical protein | |||
| 11970 | transcriptional regulator | |||
| 11975 | R | AfeYQN3ORF10580P (100% identity) | Afe40ORF11930P | |
| 11980 | 4-hydroxy-3-polyprenylbenzoate decarboxylase | |||
| 13935 | 260 aa hypothetical protein | |||
| 13940 | R | AfeBYMORF13885P (100% identity) | Afe40ORF13965P | |
| 13945 | 261 aa hypothetical protein | |||
| 13950 | S | S.AfeBYMORF13885P (100% identity) | S.Afe40ORF13965P | |
| 13955 | DUF4926 domain-containing protein | |||
| 13960 | 88 aa hypothetical protein | |||
| 13965 | M | M.AfeBYMORF13885P (100% identity) | M.Afe40ORF13965P | |
| 13970 | GIY-YIG nuclease family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 665 | 398 aa hypothetical protein | |||
| 670 | M | M.AfeBYMORF655P (100% identity) | M.Afe40ORF670P | |
| 675 | single-stranded DNA-binding protein | |||
| 3315 | 87 aa hypothetical protein | |||
| 3320 | M | M.AfeBYMORF3320P (100% identity) | M.Afe40ORF3320P | |
| 3325 | 575 aa hypothetical protein | |||
| 5030 | BREX-1 system phosphatase PglZ type A | |||
| 5035 | RM | AfeBYMORF5020CP (100% identity) | Afe40ORF5050CP | |
| 5040 | RM | AfeBYMORF5020BP (100% identity) | Afe40ORF5050BP | |
| 5045 | AAA family ATPase | |||
| 5050 | RM | AfeBYMORF5020AP (100% identity) | Afe40ORF5050AP | |
| 5055 | BREX system P-loop protein BrxC | |||
| 6655 | DUF1738 domain-containing protein | |||
| 6660 | M | M.Afe4253ORFJP (100% identity) | M.Afe40ORF6660P | |
| 6665 | DUF3991 domain-containing protein | |||
| 11720 | SAM-dependent DNA methyltransferase | |||
| 11725 | RM | AspAMDIV (100% identity) | ACCCAC | Afe40ORF11725P |
| 11730 | ATP-binding protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10685 | 308 aa hypothetical protein | |||
| 10690 | R | AfeBYMORF10675P (100% identity) | Afe40ORF10695P | |
| 10695 | M | M.AfeBYMORF10675P (100% identity) | M.Afe40ORF10695P | |
| 10700 | RloB domain-containing protein | |||
| 15860 | 287 aa hypothetical protein | |||
| 15870 | R | AfeYQN3ORF14745P (88% identity) | Afe40ORF15875P | |
| 15875 | M | M.AfeBYMORF15770AP (100% identity) | M.Afe40ORF15875AP | |
| 15880 | IS256 family transposase | |||
| 15885 | M | M.AfeYQN3ORF14745P (85% identity) | M.Afe40ORF15875BP | |
| 15890 | phosphoesterase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15835 | 98 aa hypothetical protein | |||
| 15840 | R | AfeBYMMrrP (100% identity) | Afe40MrrP | |
| 15845 | 86 aa hypothetical protein | |||