Escherichia coli WP4-W18-ESBL-08 |
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Putative Escherichia coli WP4-W18-ESBL-08 RM systems
Ref: Sekizuka,T. et al. unpublished
REBASE ref # 30911
| Sequence length: | GenBank #: | |
| Chromosome: | 4,972,339 bp | AP022064 |
| plasmid pWP4-W18-ESBL-08_1: | 134,864 bp | AP022065 |
| plasmid pWP4-W18-ESBL-08_2: | 95,805 bp | AP022066 |
REBASE acronym: Eco4L08
Org_num: 42001
All begin WP4W18E08_, WP4W18E08_P
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6350 | endoribonuclease SymE | |||
| 6360 | R | EcosS9ORF3165P (99% identity) | RTACNNNNGTG | Eco4L08ORF6380P |
| 6370 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.Eco4L08ORF6380P |
| 6380 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.Eco4L08ORF6380P |
| 6390 | 388 aa hypothetical protein | |||
| 9800 | 156 aa hypothetical protein | |||
| 9810 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco4L08ORF9820P |
| 9820 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco4L08ORF9820P |
| 9830 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco4L08ORF9820P |
| 9840 | 260 aa hypothetical protein | |||
| 42470 | transposase | |||
| 42480 | R | EcotcmA3ORF16550P (100% identity) | Eco4L08ORF42520P | |
| 42490 | 462 aa hypothetical protein | |||
| 42500 | ATP-dependent DNA helicase RecQ | |||
| 42510 | S | S.EcotcmA3ORF16550P (100% identity) | S.Eco4L08ORF42520P | |
| 42520 | M | M.Pre393ORF2750P (100% identity) | M.Eco4L08ORF42520P | |
| 42530 | 74 aa hypothetical protein | |||
| plasmid pWP4-W18-ESBL-08_1 | ||||
| 10400 | 73 aa hypothetical protein | |||
| 10410 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.Eco4L08ORF10410P |
| 10420 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.Eco4L08ORF10410P |
| 10430 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | Eco4L08ORF10410P |
| 10440 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3400 | cell division protein DamX | |||
| 3410 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco4L08DamP |
| 3420 | ribulose-phosphate 3-epimerase | |||
| 4550 | 59 aa hypothetical protein | |||
| 4560 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco4L08ORF4560P |
| 4570 | DNA-binding protein Fis | |||
| 16040 | 71 aa hypothetical protein | |||
| 16050 | M | M.KpnYN1ORFGP (89% identity) | M.Eco4L08ORF16050P | |
| 16060 | 118 aa hypothetical protein | |||
| 20500 | 65 aa hypothetical protein | |||
| 20510 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco4L08ORF20510P |
| 20520 | anti-adapter protein IraM | |||
| 27270 | inner membrane transporter YedA | |||
| 27280 | V | V.SflC32DcmP (74% identity) | V.Eco4L08DcmP | |
| 27290 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco4L08DcmP |
| 27300 | phosphohydrolase | |||
| 39840 | mcrBC 5-methylcytosine restriction system | |||
| 39850 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco4L08ORF39860P |
| 39860 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco4L08ORF39860P |
| 39870 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco4L08ORF39860P |
| 39880 | 71 aa hypothetical protein | |||
| plasmid pWP4-W18-ESBL-08_1 | ||||
| 10530 | 308 aa hypothetical protein | |||
| 10540 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco4L08ORF10540P |
| 10550 | 73 aa hypothetical protein | |||
| plasmid pWP4-W18-ESBL-08_2 | ||||
| 20790 | 73 aa hypothetical protein | |||
| 20800 | M | M.Sfl60ORF25670P (100% identity) | SAY | M.Eco4L08ORF20800P |
| 20810 | 308 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 39820 | transposase | |||
| 39830 | R | EcosS3McrBP (100% identity) | Eco4L08McrBP | |
| 39840 | R | EcosS9McrCP (100% identity) | Eco4L08McrCP | |
| 39850 | 579 aa hypothetical protein | |||