Agrobacterium vitis VAT03-9 |
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Putative Agrobacterium vitis VAT03-9 RM systems
Ref: Kawaguchi,A. et al. J. Gen. Plant Pathol. 71, 422-430 (2005)
REBASE ref # 30812
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,717,176 bp | AP023279 |
| plasmid pRvVAT039b: | 371,025 bp | AP023282 |
REBASE acronym: Avi39
Org_num: 41653
All begin RvVAT039_, RvVAT039_pl
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 4160 | 244 aa hypothetical protein | |||
| 4170 | M | M.Avi6094ORF10420P (93% identity) | M.Avi39ORF4170P | |
| 4180 | 174 aa hypothetical protein | |||
| 4750 | 184 aa hypothetical protein | |||
| ??? | V | V.KhaC110ORF1655P (60% identity) | V.Avi39ORF4780P | |
| 4760 | 310 aa hypothetical protein | |||
| 4770 | R | R1.KhaC110ORF1655P (74% identity) | Avi39ORF4780P | |
| 4780 | M | M.SspSph1ORF16855P (67% identity) | M.Avi39ORF4780P | |
| 4790 | 73 aa hypothetical protein | |||
| 9060 | 379 aa hypothetical protein | |||
| 9070 | RM | Ssp110093ORF4247P (56% identity) | Avi39ORF9070P | |
| 9080 | 154 aa hypothetical protein | |||
| 10450 | response regulator | |||
| 10460 | M | M.EspSDW2I (38% identity) | M.Avi39ORF10460P | |
| 10470 | R | GprSS5ORF12470P (21% identity) | Avi39ORF10460AP | |
| 10480 | 246 aa hypothetical protein | |||
| 10490 | R | Eco51542IIP (23% identity) | Avi39ORF10460BP | |
| 10500 | mannose-1-phosphate guanylyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pRvVAT039b | ||||
| 7720 | 164 aa hypothetical protein | |||
| 7730 | R | Avi78ORF25830P (100% identity) | Avi39ORF7740P | |
| 7740 | M | M.Avi78ORF25830P (100% identity) | M.Avi39ORF7740P | |
| 7750 | transposase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 24210 | (2Fe-2S) ferredoxin | |||
| ??? | M | M.AviS4ORF1084P (94% identity) | M.Avi39ORF24220P | |
| 24230 | 618 aa hypothetical protein | |||