Glaesserella parasuis HPS412 |
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Putative Glaesserella parasuis HPS412 RM systems
Ref: Yang,S. and Huang,C. unpublished
REBASE ref # 30789
Complete sequence: 2,479,222 bp
GenBank #: CP041334
REBASE acronym: Gpa412
Org_num: 41490
All begin FLK62_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 90 | 16S rRNA (guanine(527)-N(7))-methyltransferase | |||
| 95 | M | M.HpaST41ORF7145P (100% identity) | GTANNNNNNNCTTG | M.Gpa412ORF95P |
| 100 | 163 aa hypothetical protein | |||
| 105 | ATP-binding protein | |||
| 110 | R | Gpa29755ORF125P (99% identity) | GTANNNNNNNCTTG | Gpa412ORF95P |
| 115 | S | S.Gpa29755ORF125P (98% identity) | GTANNNNNNNCTTG | S.Gpa412ORF95P |
| 120 | tRNA uridine-5-carboxymethylaminomethyl(34) | |||
| 6095 | transposase | |||
| 6100 | R | GpaH80ORF5885P (99% identity) | Gpa412ORF6110P | |
| 6105 | S | S.HpaSH03ORF2530P (65% identity) | S.Gpa412ORF6110P | |
| 6110 | M | M.Gpa104ORFJP (99% identity) | M.Gpa412ORF6110P | |
| 6115 | RNA polymerase sigma factor RpoE | |||
| 7425 | histidinol-phosphate transaminase | |||
| 7430 | R | GpaHPS12ORF5150P (98% identity) | Gpa412ORF7440P | |
| 7435 | S | S.Ami305ORF9941P (55% identity) | S.Gpa412ORF7440P | |
| 7440 | M | M.GpaH80ORF3950P (99% identity) | M.Gpa412ORF7440P | |
| 7445 | adenine methyltransferase | |||
| 11955 | 101 aa hypothetical protein | |||
| 11960 | R | GpaH80ORF9625P (98% identity) | Gpa412ORF11990P | |
| 11965 | 145 aa hypothetical protein | |||
| 11970 | DUF1829 domain-containing protein | |||
| 11975 | S | S1.Gpa4557ORF420P (93% identity) | S1.Gpa412ORF11990P | |
| 11980 | S | S1.HpaST41ORF7300P (99% identity) | S2.Gpa412ORF11990P | |
| 11985 | AAA family ATPase | |||
| 11990 | M | M.HpaSH03ORF10045P (99% identity) | M.Gpa412ORF11990P | |
| 11995 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1325 | enoyl-CoA hydratase | |||
| 1330 | M | M.GpaHPS1ORF725P (99% identity) | M.Gpa412ORF1330P | |
| 1335 | 86 aa hypothetical protein | |||
| 3300 | sodium-dependent transporter | |||
| 3305 | M | M.GpaXP11ORF4965P (100% identity) | GATC | M.Gpa412ORF3305P |
| 3310 | 3-dehydroquinate synthase | |||
| 3655 | enoyl-CoA hydratase | |||
| 3660 | M | M.Apl123ORFDP (83% identity) | M.Gpa412ORF3660P | |
| 3665 | 86 aa hypothetical protein | |||
| 4720 | aspartate-semialdehyde dehydrogenase | |||
| 4725 | M | M.GpaHPS1ORF8345P (99% identity) | M.Gpa412ORF4725P | |
| 4730 | transposase | |||
| 7165 | restriction endonuclease subunit M | |||
| 7170 | S | S.Hpa33ORF10915P (96% identity) | S.Gpa412ORF7180P | |
| 7175 | R | HpaSH03ORF4035P (100% identity) | Gpa412ORF7180P | |
| ??? | M | M.GpaHF57ORF9910P (100% identity) | M.Gpa412ORF7180P | |
| 7185 | M48 family metallopeptidase | |||
| 7865 | 199 aa hypothetical protein | |||
| 7870 | M | M.GpaHPS1ORF5345P (100% identity) | M.Gpa412ORF7870P | |
| 7875 | chromosome partition protein MukE | |||
| 8670 | bacteriocin | |||
| 8675 | M | M.Hpa906ORF4120P (100% identity) | M.Gpa412ORF8675P | |
| 8680 | 169 aa hypothetical protein | |||
| 11730 | virulence RhuM family protein | |||
| 11735 | S | S2.GpaHPS1ORF10810P (88% identity) | S2.Gpa412ORF11740P | |
| 11740 | S | S.GpaHPS12ORF950P (98% identity) | S1.Gpa412ORF11740P | |
| 11745 | N-6 DNA methylase | |||
| 11740 | restriction endonuclease | |||
| 11745 | RM | HpaSH03ORF10290P (99% identity) | Gpa412ORF11745P | |
| 11750 | ATP-binding protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 620 | IS1595 family transposase | |||
| 625 | R | HpaST41ORF1100P (99% identity) | Gpa412ORF630P | |
| 630 | M | M.HpaST41ORF1100P (100% identity) | M.Gpa412ORF630P | |
| 635 | helix-turn-helix transcriptional regulator | |||
| 2645 | beta-ketoacyl-ACP synthase I | |||
| 2650 | R | Hpa318ORF4370P (99% identity) | Gpa412ORF2655P | |
| 2655 | M | M.GpaH80ORF225P (99% identity) | M.Gpa412ORF2655P | |
| 2660 | DUF4391 family protein | |||
| 11160 | Fic family protein | |||
| 11165 | R | HpaNagORF1223P (99% identity) | Gpa412ORF11170P | |
| 11170 | M | M.Hpa906ORF25P (57% identity) | M1.Gpa412ORF11170P | |
| 11175 | M | M.GpaH80ORF8730AP (94% identity) | M2.Gpa412ORF11170P | |
| 11180 | ketol-acid reductoisomerase | |||