Agrobacterium species CGMCC 11546 |
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Putative Agrobacterium species CGMCC 11546 RM systems
Ref: Gao,H. et al. Carbohydr Polym 245, 116486 (2020)
REBASE ref # 30698
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,036,316 bp | CP047387 |
| chromosome 2: | 1,926,885 bp | CP047388 |
REBASE acronym: Asp11546
Org_num: 41197
All begin GSF67_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 2 | ||||
| 20035 | recombinase family protein | |||
| 20040 | M | M.Asp31749ORF2997P (100% identity) | M.Asp11546ORF20040P | |
| 20045 | AAA family ATPase | |||
| 20050 | S | S.Asp31749ORF2997P (66% identity) | S2.Asp11546ORF20040P | |
| 20055 | IS3 family transposase | |||
| 20060 | S | S.Asp31749ORF2997P (31% identity) | S3.Asp11546ORF20040P | |
| 20065 | R | Asp31749ORF2997P (100% identity) | Asp11546ORF20040P | |
| 20070 | helix-turn-helix domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 7035 | hydrolase | |||
| 7040 | M | M.Asp31749ORF4602P (100% identity) | M.Asp11546ORF7040P | |
| 7045 | DNA double-strand break repair nuclease NurA | |||
| 8090 | 3-5 exoribonuclease | |||
| 8095 | M | M.Asp31749ORF3714P (30% identity) | M.Asp11546ORF8095P | |
| 8100 | DUF2815 family protein | |||
| 8300 | 83 aa hypothetical protein | |||
| 8305 | M | M.Asp31749ORF3668P (100% identity) | M.Asp11546ORF8305P | |
| 8310 | 86 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2620 | 366 aa hypothetical protein | |||
| ??? | M | M.Asp31749ORF89P (98% identity) | GANTC | M.Asp11546ORF2625P |
| 2630 | 78 aa hypothetical protein | |||