Escherichia coli YJ1 |
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Putative Escherichia coli YJ1 RM systems
Ref: Sugawara,Y. et al. unpublished
REBASE ref # 30654
| Sequence length: | GenBank #: | |
| Chromosome: | 4,847,574 bp | AP023224 |
| plasmid pYJ1-NDM5: | 108,281 bp | AP023225 |
REBASE acronym: EcoYJ1
Org_num: 40987
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| ??? | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoYJ1ORFCP |
| ??? | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoYJ1ORFCP |
| ??? | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoYJ1ORFCP |
| ??? | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.EcoYJ1ORFDP |
| ??? | S | S.Ecos2020ORFCP (100% identity) | YTCANNNNNNGTTY | S.EcoYJ1ORFDP |
| ??? | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | EcoYJ1ORFDP |
| ??? | R | Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | EcoYJ1ORFFP |
| ??? | S | S.Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | S.EcoYJ1ORFFP |
| ??? | M | M.SenS0935ORF770P (99% identity) | ACYNNNNNNGTTC | M.EcoYJ1ORFFP |
| plasmid pYJ1-NDM5 | ||||
| ??? | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNNCTGG | EcoYJ1ORFAP |
| ??? | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoYJ1ORFAP |
| ??? | M | M.Ecos2020ORFGP (100% identity) | CAAYNNNNNNCTGG | M.EcoYJ1ORFAP |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoYJ1DamP |
| ??? | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoYJ1ORFBP |
| ??? | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoYJ1DcmP |
| ??? | V | V.SflFF64DcmP (100% identity) | V.EcoYJ1DcmP | |
| ??? | M | M.EcosE2ORF21575P (100% identity) | M.EcoYJ1ORFGP | |
| plasmid pYJ1-NDM5 | ||||
| ??? | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoYJ1ORFHP |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| ??? | R | EcosEC27McrCP (100% identity) | EcoYJ1McrCP | |
| ??? | R | Ecos2020McrBP (100% identity) | EcoYJ1McrBP | |
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| ??? | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoYJ1ORFEP |