Helicobacter suis NHP19-4004 |
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Putative Helicobacter suis NHP19-4004 RM systems
Ref: Suzuki,M. and Rimbara,E. unpublished
REBASE ref # 30607
| Sequence length: | GenBank #: | |
| Chromosome: | 1,703,808 bp | AP023042 |
| plasmid pNHP194004_2: | 10,856 bp | AP023044 |
REBASE acronym: Hpy4004
Org_num: 40848
All begin NHP194004_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4890 | 3-deoxy-D-manno-octulosonate 8-phosphate | |||
| ??? | R | Hsu0020ORF6320P (100% identity) | Hpy4004ORF4930P | |
| 4920 | S | S.Hsu4022ORF4640P (100% identity) | S.Hpy4004ORF4930P | |
| 4930 | M | M.Hsu101cORF7690P (100% identity) | M.Hpy4004ORF4930P | |
| 4940 | Outer membrane protein | |||
| 11320 | S-ribosylhomocysteine lyase LuxS | |||
| ??? | RM | M.Hsu4022ORF7850P (100% identity) | Hpy4004ORF11330P | |
| 11350 | S | S.Hsu101ORFDP (100% identity) | S.Hpy4004ORF11330P | |
| 11360 | 82 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1170 | 85 aa hypothetical protein | |||
| ??? | M | M.Hsu0020ORF1190P (100% identity) | M.Hpy4004ORF1180P | |
| 1200 | 287 aa hypothetical protein | |||
| 1330 | selenocysteine-specific translation elongation | |||
| 1340 | M | M.HsuHS1ORF1490P (100% identity) | M.Hpy4004ORF1340P | |
| 1350 | 299 aa hypothetical protein | |||
| 1380 | Glucose-6-phosphate isomerase Pgi | |||
| 1390 | RM | Hsu4022ORF1410P (99% identity) | Hpy4004ORF1390P | |
| 1400 | 146 aa hypothetical protein | |||
| 2120 | 1-deoxy-D-xylulose-5-phosphate synthase Dxs | |||
| ??? | M | M.Hsu4022ORF2180P (100% identity) | M.Hpy4004ORF2130P | |
| 2150 | 640 aa hypothetical protein | |||
| 2190 | ABC transporter ATP-binding protein YheS | |||
| 2200 | R | Hpy4003ORF2210P (99% identity) | Hpy4004ORF2210P | |
| 2210 | M | M.Hsu4022ORF2260P (87% identity) | M.Hpy4004ORF2210P | |
| 2220 | Phosphatidylglycerophosphatase A PgpA | |||
| 2810 | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | |||
| 2820 | M | M.Hsu4022ORF2850P (100% identity) | M.Hpy4004ORF2820P | |
| 2830 | R | Hsu101cORF2840P (99% identity) | Hpy4004ORF2820P | |
| 2840 | 256 aa hypothetical protein | |||
| 3950 | 39 aa hypothetical protein | |||
| 3960 | M | M.Hpy4003ORF3980P (100% identity) | M.Hpy4004ORF3960P | |
| 3970 | 467 aa hypothetical protein | |||
| 4230 | 239 aa hypothetical protein | |||
| 4240 | R | Hsu4022ORF4350P (100% identity) | Hpy4004ORF4250P | |
| ??? | M | M.Hsu4022ORF4350P (100% identity) | M.Hpy4004ORF4250P | |
| 4260 | Secreted protein | |||
| 4390 | methyl-accepting chemotaxis sensory transducer | |||
| 4400 | RM | HsuHS1ORF9820P (100% identity) | Hpy4004ORF4400P | |
| 4410 | S | S.Hsu4022ORF4500P (97% identity) | S.Hpy4004ORF4400P | |
| 4420 | 262 aa hypothetical protein | |||
| 5210 | Shikimate kinase AroK | |||
| 5230 | M | M1.Hsu101cORF11240P (100% identity) | M1.Hpy4004ORF5230P | |
| 5240 | M | M2.HsuHS1ORF9300P (100% identity) | M2.Hpy4004ORF5230P | |
| 5250 | R | HsuHS1ORF9300P (99% identity) | Hpy4004ORF5230P | |
| 5260 | Phosphotransacetylase | |||
| 6890 | Shikimate 5-dehydrogenase | |||
| 6900 | M | M.HsuHS1ORF7680P (100% identity) | M.Hpy4004ORF6900P | |
| ??? | R | Hsu4022ORF9470P (99% identity) | Hpy4004ORF6900P | |
| 6920 | DNA polymerase III subunit delta HolA | |||
| 8720 | 109 aa hypothetical protein | |||
| 8730 | M | M.Hsu4022ORF11330P (100% identity) | M.Hpy4004ORF8730P | |
| 8740 | NADPH dehydrogenase | |||
| 12400 | 53 aa hypothetical protein | |||
| 12410 | M | M.Hsu101cORF3700P (100% identity) | M.Hpy4004ORF12410P | |
| 12420 | 134 aa hypothetical protein | |||
| 16220 | Fumarate hydratase FumC | |||
| 16230 | M | M.HsuHS1ORF3730P (100% identity) | M.Hpy4004ORF16230P | |
| 16240 | 193 aa hypothetical protein | |||
| 16770 | 766 aa hypothetical protein | |||
| ??? | M | M.Hsu4022ORF16450P (100% identity) | M.Hpy4004ORF16780P | |
| 16800 | 110 aa hypothetical protein | |||
| 17160 | 190 aa hypothetical protein | |||
| ??? | R | Hsu4022ORF16820P (100% identity) | Hpy4004ORF17180P | |
| 17180 | M | M.HsuHS1ORF18000P (100% identity) | M.Hpy4004ORF17180P | |
| 17190 | Molybdopterin-guanine dinucleotide biosynthesis | |||
| plasmid pNHP194004_2 | ||||
| 17700 | 802 aa hypothetical protein | |||
| 17710 | M | M1.Hsu101cORF17360P (95% identity) | M1.Hpy4004ORF17710P | |
| 17720 | M | M2.Hsu101cORF17360P (100% identity) | M2.Hpy4004ORF17710P | |
| 17730 | R | Hsu101cORF17360P (100% identity) | Hpy4004ORF17710P | |
| 17740 | 103 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1050 | HIT family protein | |||
| 1060 | M | M.Hsu4022ORF1060P (100% identity) | M.Hpy4004ORF1060P | |
| 1070 | 97 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5930 | 101 aa hypothetical protein | |||
| 5940 | R | Hsu0020McrBP (99% identity) | Hpy4004McrBP | |
| 5950 | R | Hsu0020McrCP (99% identity) | Hpy4004McrCP | |
| 5960 | Alginate_lyase domain-containing protein | |||