Helicobacter suis NHP19-4003 |
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Putative Helicobacter suis NHP19-4003 RM systems
Ref: Suzuki,M. and Rimbara,E. unpublished
REBASE ref # 30607
| Sequence length: | GenBank #: | |
| Chromosome: | 1,689,367 bp | AP023039 |
| plasmid pNHP194003_1: | 19,849 bp | AP023040 |
REBASE acronym: Hpy4003
Org_num: 40847
All begin NHP194003_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4930 | 3-deoxy-D-manno-octulosonate 8-phosphate | |||
| 4940 | R | Hsu4022ORF4640P (100% identity) | Hpy4003ORF4960P | |
| 4950 | S | S.Hsu4022ORF4640P (100% identity) | S.Hpy4003ORF4960P | |
| 4960 | M | M.Hsu101cORF7690P (99% identity) | M.Hpy4003ORF4960P | |
| 4970 | Outer membrane protein | |||
| 11310 | S-ribosylhomocysteine lyase LuxS | |||
| ??? | RM | M.Hsu101cORF9840P (100% identity) | Hpy4003ORF11320P | |
| 11340 | S | S.Hsu101ORFDP (100% identity) | S.Hpy4003ORF11320P | |
| 11350 | 82 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1160 | 85 aa hypothetical protein | |||
| ??? | M | M.Hsu4022ORF1200P (100% identity) | M.Hpy4003ORF1170P | |
| 1190 | 287 aa hypothetical protein | |||
| 1320 | selenocysteine-specific translation elongation | |||
| 1330 | M | M.HsuHS1ORF1490P (100% identity) | M.Hpy4003ORF1330P | |
| 1340 | 299 aa hypothetical protein | |||
| 1370 | Glucose-6-phosphate isomerase Pgi | |||
| 1380 | RM | Hpy4004ORF1390P (98% identity) | Hpy4003ORF1380P | |
| 1390 | 123 aa hypothetical protein | |||
| 2120 | 1-deoxy-D-xylulose-5-phosphate synthase Dxs | |||
| ??? | M | M.Hsu4022ORF2180P (86% identity) | M.Hpy4003ORFAP | |
| 2150 | 640 aa hypothetical protein | |||
| 2190 | ABC transporter ATP-binding protein YheS | |||
| 2200 | R | Hpy4004ORF2210P (99% identity) | Hpy4003ORF2210P | |
| ??? | M | M.HsuHS1ORF2460P (92% identity) | M.Hpy4003ORF2210P | |
| 2230 | Phosphatidylglycerophosphatase A PgpA | |||
| 2810 | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | |||
| 2820 | M | M.Hsu4022ORF2850P (100% identity) | M.Hpy4003ORF2820P | |
| 2830 | R | Hsu101cORF2840P (100% identity) | Hpy4003ORF2820P | |
| 2840 | 256 aa hypothetical protein | |||
| 3970 | 39 aa hypothetical protein | |||
| 3980 | M | M.Hpy4004ORF3960P (100% identity) | M.Hpy4003ORF3980P | |
| 3990 | 465 aa hypothetical protein | |||
| 4250 | 239 aa hypothetical protein | |||
| 4260 | R | Hsu4022ORF4350P (100% identity) | Hpy4003ORF4270P | |
| ??? | M | M.Hsu4022ORF4350P (100% identity) | M.Hpy4003ORF4270P | |
| 4280 | Secreted protein | |||
| 4410 | methyl-accepting chemotaxis sensory transducer | |||
| 4420 | RM | HsuHS1ORF9820P (100% identity) | Hpy4003ORF4420P | |
| 4430 | S | S.Hsu4022ORF4500P (99% identity) | S.Hpy4003ORF4420P | |
| 4440 | 259 aa hypothetical protein | |||
| 5240 | Shikimate kinase AroK | |||
| 5260 | M | M1.Hsu101cORF11240P (100% identity) | M1.Hpy4003ORF5260P | |
| 5270 | M | M2.HsuHS1ORF9300P (100% identity) | M2.Hpy4003ORF5260P | |
| 5280 | R | HsuHS1ORF9300P (99% identity) | Hpy4003ORF5260P | |
| 5290 | Phosphotransacetylase | |||
| 6920 | Shikimate 5-dehydrogenase | |||
| 6930 | M | M.HsuHS1ORF7680P (100% identity) | M.Hpy4003ORF6930P | |
| ??? | R | Hsu4022ORF9470P (100% identity) | Hpy4003ORF6930P | |
| 6950 | DNA polymerase III subunit delta HolA | |||
| 8750 | 109 aa hypothetical protein | |||
| 8760 | M | M.Hsu4022ORF11330P (100% identity) | M.Hpy4003ORF8760P | |
| 8770 | NADPH dehydrogenase | |||
| 12350 | 53 aa hypothetical protein | |||
| 12360 | M | M.Hsu101cORF3700P (100% identity) | M.Hpy4003ORF12360P | |
| 12370 | 134 aa hypothetical protein | |||
| 16020 | Fumarate hydratase FumC | |||
| 16030 | M | M.HsuHS1ORF3730P (100% identity) | M.Hpy4003ORF16030P | |
| 16040 | 193 aa hypothetical protein | |||
| 16560 | 766 aa hypothetical protein | |||
| ??? | M | M.Hsu4022ORF16450P (100% identity) | M.Hpy4003ORF16570P | |
| 16590 | 110 aa hypothetical protein | |||
| 16930 | 190 aa hypothetical protein | |||
| 16940 | R | Hsu4022ORF16820P (34% identity) | Hpy4003ORF16950P | |
| 16950 | M | M.HsuHS1ORF18000P (100% identity) | M.Hpy4003ORF16950P | |
| 16960 | Molybdopterin-guanine dinucleotide biosynthesis | |||
| plasmid pNHP194003_1 | ||||
| 17420 | 103 aa hypothetical protein | |||
| 17430 | R | Hsu101cORF17360P (100% identity) | Hpy4003ORF17440P | |
| 17440 | M | M2.Hsu101cORF17360P (99% identity) | M1.Hpy4003ORF17440P | |
| 17450 | M | M1.Hsu101cORF17360P (100% identity) | M2.Hpy4003ORF17440P | |
| 17460 | 802 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1040 | HIT family protein | |||
| 1050 | M | M.Hsu4022ORF1060P (100% identity) | M.Hpy4003ORF1050P | |
| 1060 | 97 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5960 | 119 aa hypothetical protein | |||
| 5970 | R | HsuHS1McrBP (99% identity) | Hpy4003McrBP | |
| 5980 | R | HsuHS1McrCP (100% identity) | Hpy4003McrCP | |
| 5990 | Alginate_lyase domain-containing protein | |||