Helicobacter pylori HpKE21 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori HpKE21 RM systems
Ref: Mwangi,C.N. et al. unpublished
REBASE ref # 30697
Complete sequence: 1,648,327 bp
GenBank #: AP023320
REBASE acronym: HpyKE21
Org_num: 41194
All begin HPKE_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 950 | formyltetrahydrofolate deformylase PurU | |||
| 960 | S | S.HpyKE21ORF9560P (98% identity) | S.HpyKE21ORF960P | |
| 970 | ribosomal RNA large subunit methyltransferase N | |||
| 6220 | polyphosphate kinase Ppk | |||
| 6230 | S | S.HpyCOL112III (98% identity) | CCANNNNNNTC | S.HpyKE21ORF6240P |
| 6240 | M | M.HpyU208VI (97% identity) | CCANNNNNNTC | M.HpyKE21ORF6240P |
| ??? | R | HpyAL6IIIP (93% identity) | CCANNNNNNTC | HpyKE21ORF6240P |
| 6270 | PH domain-containing protein | |||
| 9550 | outer membrane protein HofF | |||
| 9560 | S | S.HpyKE21ORF960P (98% identity) | S.HpyKE21ORF9560P | |
| 9570 | CAAX protease | |||
| 10150 | hydroxyethylthiazole kinase ThiM | |||
| 10160 | R | HpySA20ORF901P (91% identity) | HpyKE21ORF10180P | |
| 10170 | S | S.HpySP15XV (68% identity) | S.HpyKE21ORF10180P | |
| 10180 | M | M.HpySWT10XV (94% identity) | M.HpyKE21ORF10180P | |
| 10190 | cytosine-specific methyltransferase | |||
| 15410 | metal-dependent hydrolase | |||
| ??? | R | HpyBR5XIIIP (95% identity) | HpyKE21ORF15440P | |
| ??? | M | M.HpyU412III (92% identity) | M.HpyKE21ORF15440P | |
| 15470 | S | S.HpySP710ORF6645P (89% identity) | S.HpyKE21ORF15440P | |
| 15480 | FAD-dependent thymidylate synthase ThyX | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 90 | type III restriction enzyme Res | |||
| 100 | RM | HpyPO04ORF7000P (71% identity) | HpyKE21ORF100P | |
| 110 | 187 aa hypothetical protein | |||
| 550 | amidophosphoribosyltransferase | |||
| 560 | RM | HpySA7ORF6995P (97% identity) | HpyKE21ORF560P | |
| 570 | S | S.HpyCO1ORF7000P (49% identity) | S1.HpyKE21ORF560P | |
| 580 | S | S2.HpyH017ORF7335P (91% identity) | S2.HpyKE21ORF560P | |
| 590 | DNA polymerase I PolA | |||
| 1430 | 475 aa hypothetical protein | |||
| 1440 | M | M.HpyCO1ORF7430P (83% identity) | M.HpyKE21ORF1440P | |
| 1450 | elongation factor Tfs | |||
| 2420 | agmatine deiminase | |||
| 2430 | M | M1.HpySP302VI (98% identity) | CCTC | M1.HpyKE21ORF2430P |
| 2440 | M | M2.HpySP509VP (98% identity) | CCTC | M2.HpyKE21ORF2430P |
| 2450 | R | Hpy3250ORF7020P (92% identity) | CCTC | HpyKE21ORF2430P |
| 2460 | sodium/proline symporter PutP | |||
| 2820 | Malonyl CoA-acyl carrier protein transacylase | |||
| ??? | R | HpyCO6VIIP (98% identity) | GATC | HpyKE21ORF2850P |
| 2850 | M | M.HpyCO6VII (98% identity) | GATC | M.HpyKE21ORF2850P |
| 2860 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 3640 | elongation factor P EfP | |||
| 3650 | M | M.HpyZ002ORF4590P (99% identity) | M.HpyKE21ORF3650P | |
| 3660 | 256 aa hypothetical protein | |||
| 3670 | R | R1.HpySP13ORF865P (97% identity) | R1.HpyKE21ORF3650P | |
| 3680 | R | R1.HpyZ002ORF4590P (100% identity) | R2.HpyKE21ORF3650P | |
| 3690 | pseudoaminic acid synthase neuB | |||
| 4500 | exodeoxyribonuclease VII large subunit XseA | |||
| 4510 | M | M.Hpy5056ORF6820P (92% identity) | TCGA | M.HpyKE21ORF4510P |
| 4520 | 86 aa hypothetical protein | |||
| 4520 | 86 aa hypothetical protein | |||
| ??? | R | HpySP18VIIIP (93% identity) | CCGG | HpyKE21ORF4540P |
| 4540 | M | M.HpyZ011III (100% identity) | CCGG | M.HpyKE21ORF4540P |
| 4550 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 5370 | GTP-binding protein LepA | |||
| 5380 | M | M.Hpybs1ORFFP (86% identity) | M.HpyKE21ORF5380P | |
| 5390 | 133 aa hypothetical protein | |||
| 6390 | outer membrane protein | |||
| ??? | M | M.HpyC61IV (96% identity) | ATTAAT | M.HpyKE21ORF6400P |
| 6420 | non-functionaltype II restriction endonuclease | |||
| 6430 | GTP-binding protein TypA | |||
| 6440 | M | M.HpyCO10II (98% identity) | ACNGT | M.HpyKE21ORF6440P |
| 6450 | R | HpyU003IIP (97% identity) | ACNGT | HpyKE21ORF6440P |
| 6460 | cytosine-specific methyltransferase | |||
| 6450 | type II restriction endonuclease | |||
| 6460 | M | M.HpyU403ORF2350P (97% identity) | ACGT | M.HpyKE21ORF6460P |
| ??? | R | HpyBR20ORF2255P (71% identity) | ACGT | HpyKE21ORF6460P |
| 6480 | catalase-like protein | |||
| 6670 | DNA gyrase subunit B GyrB | |||
| ??? | M | M.HpyMT5114VIII (98% identity) | GTAC | M.HpyKE21ORF6680P |
| ??? | R | HpyC82VIIP (97% identity) | GTAC | HpyKE21ORF6680P |
| 6700 | PG-modifying enzyme, HdpA | |||
| 8320 | anaerobic glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyCOL105ORF3475P (92% identity) | HpyKE21ORF8330P | |
| 8350 | SIR2_2 domain-containing protein | |||
| 8530 | 3-5 exonuclease | |||
| ??? | M | M.HpyH020ORF3275P (99% identity) | CCNNGG | M.HpyKE21ORF8540P |
| ??? | R | HpyZ010VIP (97% identity) | CCNNGG | HpyKE21ORF8540P |
| 8590 | acetone carboxylase subunit gamma | |||
| 9850 | 148 aa hypothetical protein | |||
| 9860 | R | HpyU432VIP (99% identity) | CGWCG | HpyKE21ORF9870P |
| 9870 | M | M.HpyU432VI (100% identity) | CGWCG | M.HpyKE21ORF9870P |
| 9880 | 221 aa hypothetical protein | |||
| 10180 | type I restriction-modification system, M | |||
| 10190 | M | M.HpyU420ORF3930P (100% identity) | M.HpyKE21ORF10190P | |
| 10200 | R | HpyAR6ORF4065P (99% identity) | HpyKE21ORF10190P | |
| 10210 | integral membrane protein | |||
| 10730 | flagellar hook protein FlgE | |||
| 10740 | R | HpySW27XIIP (95% identity) | GTNNAC | HpyKE21ORF10750P |
| 10750 | M | M.HpySP202IX (96% identity) | GTNNAC | M.HpyKE21ORF10750P |
| 10760 | DNA helicase | |||
| 12440 | 67 aa hypothetical protein | |||
| 12450 | M | M.HpyKG1VII (98% identity) | TCNNGA | M.HpyKE21ORF12450P |
| ??? | R | HpyU418ORF5330P (97% identity) | TCNNGA | HpyKE21ORF12450P |
| 12470 | laminin subunit alpha-2 | |||
| 12820 | flagellar protein FlgN | |||
| 12830 | M | M.HpyC124XIV (97% identity) | GCGC | M.HpyKE21ORF12830P |
| 12840 | FlgM protein | |||
| 13710 | Haloacid dehalogenase | |||
| 13720 | M | M.HpyBR5I (98% identity) | CATG | M.HpyKE21ORF13720P |
| 13730 | IceA2 | |||
| 15100 | carboxyl-terminal protease Prc | |||
| 15110 | R | Hpy908ORF1355P (97% identity) | GANTC | HpyKE21ORF15120P |
| 15120 | M | M.HpyCO5VII (100% identity) | GANTC | M.HpyKE21ORF15120P |
| 15130 | N-6 DNA methylase | |||
| 15120 | adenine specific DNA methyltransferase | |||
| ??? | RM | HpyKH33ORFRP (78% identity) | HpyKE21ORF15130P | |
| 15140 | nicotinate-nucleotide pyrophosphorylase NadC | |||
| 15240 | OmpR family DNA-binding response regulator | |||
| 15250 | R | HpyU421ORF6615P (98% identity) | HpyKE21ORF15250P | |
| 15260 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 60 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyU105ORF6885P (95% identity) | M.HpyKE21ORF70P | |
| 90 | R | HpyBR23ORF6855P (95% identity) | HpyKE21ORF70P | |
| 100 | type IIG restriction enzyme R and M protein | |||
| 1250 | biotin synthase BioB | |||
| 1260 | R | HpyU414ORF6605P (90% identity) | HpyKE21ORF1270P | |
| ??? | M | M.HpyID1ORF6970P (93% identity) | M.HpyKE21ORF1270P | |
| 1290 | endonuclease G | |||
| 1400 | Rod shape-determining protein MreC | |||
| 1410 | R | HpyCO1ORF7425P (96% identity) | TCAG | HpyKE21ORF1420P |
| ??? | M | M.HpyME40ORF6665P (92% identity) | TCAG | M.HpyKE21ORF1420P |
| 1440 | methyltransferase | |||