Escherichia coli O157:H7 USDA5905 |
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Putative Escherichia coli O157:H7 USDA5905 RM systems
Ref: Bono,J.L. unpublished
REBASE ref # 30303
| Sequence length: | GenBank #: | |
| Chromosome: | 5,431,628 bp | CP039837 |
| plasmid pUSDA5905_1: | 95,647 bp | CP039843 |
| plasmid pUSDA5905_2: | 62,787 bp | CP039842 |
| plasmid pUSDA5905_4: | 6,265 bp | CP039840 |
REBASE acronym: EcoA5905
Org_num: 40718
All begin E3175_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24080 | DUF262 domain-containing protein | |||
| 24085 | R | EcoTB182AORF22480P (100% identity) | CACNNNNNNNCTGG | EcoA5905ORF24090P |
| 24090 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.EcoA5905ORF24090P |
| 24095 | S | S.EcoTB182AORF22480P (100% identity) | CACNNNNNNNCTGG | S.EcoA5905ORF24090P |
| 24100 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2335 | cell division protein DamX | |||
| 2340 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoA5905DamP |
| 2345 | ribulose-phosphate 3-epimerase | |||
| 2865 | DUF2556 domain-containing protein | |||
| 2870 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoA5905ORF2870P |
| 2875 | DNA-binding transcriptional regulator Fis | |||
| 9095 | recombination protein NinB | |||
| 9100 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoA5905ORF9100P |
| 9105 | NinE family protein | |||
| 10895 | phosphohydrolase | |||
| 10900 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoA5905DcmP |
| 10905 | V | V.EcosPA8DcmP (100% identity) | V.EcoA5905DcmP | |
| 10910 | drug/metabolite exporter YedA | |||
| 11480 | TrmB family transcriptional regulator | |||
| 11485 | M | M.Ecostr10ORF17240P (99% identity) | M.EcoA5905ORF11485P | |
| 11505 | Shiga toxin Stx2 subunit A | |||
| 13370 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.EcoA5905ORF13375P | |
| 13380 | 59 aa hypothetical protein | |||
| 17850 | 67 aa hypothetical protein | |||
| 17870 | M | M.EcoS7005ORFLP (100% identity) | M.EcoA5905ORF17870P | |
| 17875 | TrmB family transcriptional regulator | |||
| 22280 | NinE family protein | |||
| 22285 | M | M.EcoTB182AORF20675P (100% identity) | GATC | M.EcoA5905ORF22285P |
| 22290 | recombination protein NinB | |||
| 24310 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoA5905ORF24310P |
| 24315 | DEAD/DEAH box helicase | |||
| 24345 | N-acetylneuraminate epimerase | |||
| 24350 | R | EcoS946ORF14580P (99% identity) | EcoA5905ORF24350P | |
| 24355 | transposase | |||
| plasmid pUSDA5905_1 | ||||
| 27930 | recombination-associated protein RdgC | |||
| 27935 | M | M.Sen94620ORF28085P (100% identity) | M.EcoA5905ORF27935P | |
| 27950 | 61 aa hypothetical protein | |||
| plasmid pUSDA5905_2 | ||||
| 27685 | 59 aa hypothetical protein | |||
| 27690 | M | M.EcoTB182AORF25840P (100% identity) | M.EcoA5905ORF27690P | |
| 27695 | 73 aa hypothetical protein | |||
| plasmid pUSDA5905_4 | ||||
| 27210 | R | EcoSCU105ORF25820P (100% identity) | EcoA5905ORF27205P | |
| 27215 | C | C.EcoSCU105ORF25820P (100% identity) | C.EcoA5905ORF27205P | |
| 27220 | 65 aa hypothetical protein | |||
| 27225 | MbeD family mobilization/exclusion protein | |||
| 27230 | mobilization protein | |||
| 27235 | nuclease | |||
| 27240 | MobC family plasmid mobilization relaxosome | |||
| 27245 | Rop family plasmid primer RNA-binding protein | |||
| 27250 | 102 aa hypothetical protein | |||
| 27205 | M | M.EcoSCU105ORF25820P (98% identity) | M.EcoA5905ORF27205P | |