Escherichia coli SCU-182 |
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Putative Escherichia coli SCU-182 RM systems
Ref: Stephens,C. et al. unpublished
REBASE ref # 30384
| Sequence length: | GenBank #: | |
| Chromosome: | 5,015,404 bp | CP054372 |
| plasmid pSCU-182-1: | 74,727 bp | CP054373 |
| plasmid pSCU-182-1: | 33,723 bp | CP054374 |
REBASE acronym: EcoSCU182
Org_num: 40283
All begin HPE40_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 415 | 210 aa hypothetical protein | |||
| 420 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoSCU182ORF425P |
| 425 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoSCU182ORF425P |
| 430 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoSCU182ORF425P |
| 435 | 267 aa hypothetical protein | |||
| 22875 | endoribonuclease SymE | |||
| 22880 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | EcoSCU182ORF22890P |
| 22885 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.EcoSCU182ORF22890P |
| 22890 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.EcoSCU182ORF22890P |
| 22895 | restriction endonuclease | |||
| plasmid pSCU-182-1 | ||||
| 24545 | IS1 family transposase | |||
| 24550 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | EcoSCU182ORF24560P |
| 24555 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoSCU182ORF24560P |
| 24560 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.EcoSCU182ORF24560P |
| 24565 | IS3-like element ISEc52 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3890 | 71 aa hypothetical protein | |||
| 3895 | M | M.KpnYN1ORFGP (89% identity) | M.EcoSCU182ORF3895P | |
| 3900 | helix-turn-helix transcriptional regulator | |||
| 6120 | TrmB family transcriptional regulator | |||
| 6125 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoSCU182ORF6125P |
| 6140 | DUF3927 family protein | |||
| 9625 | drug/metabolite exporter YedA | |||
| 9630 | V | V.SflC32DcmP (74% identity) | V.EcoSCU182DcmP | |
| 9635 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoSCU182DcmP |
| 9640 | phosphohydrolase | |||
| 12470 | 73 aa hypothetical protein | |||
| 12475 | M | M.PaeZPPH14ORF6085P (100% identity) | M.EcoSCU182ORF12475P | |
| 12480 | R | PaeZPPH14ORF6085P (100% identity) | EcoSCU182ORF12475P | |
| 12485 | V | V.PaeZPPH14ORF6085P (100% identity) | V.EcoSCU182ORF12475P | |
| 12490 | addiction module antidote protein | |||
| 16805 | DNA-binding transcriptional regulator Fis | |||
| 16810 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoSCU182ORF16810P |
| 16815 | DUF2556 family protein | |||
| 17405 | ribulose-phosphate 3-epimerase | |||
| 17410 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSCU182DamP |
| 17415 | cell division protein DamX | |||
| 22530 | helix-turn-helix domain-containing protein | |||
| 22535 | M | M2.EcosEC4ORF20110P (97% identity) | GGTCTC | M1.EcoSCU182ORF22535P |
| 22540 | M | M2.EcosS9ORF2810P (97% identity) | GGTCTC | M2.EcoSCU182ORF22535P |
| 22545 | R | EcoSME98ORF8080P (88% identity) | GGTCTC | EcoSCU182ORF22535P |
| 22550 | McrC family protein | |||
| plasmid pSCU-182-1 | ||||
| 24485 | 73 aa hypothetical protein | |||
| 24490 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoSCU182ORF24490P |
| 24495 | 102 aa hypothetical protein | |||
| plasmid pSCU-182-1 | ||||
| 24795 | 103 aa hypothetical protein | |||
| 24800 | M | M.Sfl7ORF23565P (100% identity) | M.EcoSCU182ORF24800P | |
| 24805 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22545 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 22550 | R | EcosS9McrCP (100% identity) | EcoSCU182McrCP | |
| 22555 | R | EcosS3McrBP (100% identity) | EcoSCU182McrBP | |
| 22560 | glycosyltransferase family 2 protein | |||