Escherichia coli CP8-3_Sichuan |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli CP8-3_Sichuan RM systems
Ref: Li,R. et al. unpublished
REBASE ref # 30299
| Sequence length: | GenBank #: | |
| Chromosome: | 4,726,108 bp | CP053736 |
| plasmid pCP8-3-IncFII: | 87,125 bp | CP053737 |
REBASE acronym: EcoCP83
Org_num: 39997
All begin HP430_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11020 | M48 family metallopeptidase | |||
| 11025 | R | Eco13C18ORF9060P (99% identity) | EcoCP83ORF11025P | |
| 11030 | cold shock domain-containing protein | |||
| 15495 | transposase | |||
| 15500 | M | M.KpnS1313ORF16435P (98% identity) | M.EcoCP83ORF15500P | |
| 15505 | S | S.EcoXJ62ORF5350P (60% identity) | S.EcoCP83ORF15500P | |
| 15510 | R | Csp859ORF5410P (100% identity) | EcoCP83ORF15500P | |
| 15515 | IS1 family transposase | |||
| 17435 | ATP-binding protein | |||
| 17440 | R | SenSI167ORF3215P (100% identity) | EcoCP83ORF17455P | |
| 17445 | DUF4268 domain-containing protein | |||
| 17450 | S | S.SenSI167ORF3215P (100% identity) | S.EcoCP83ORF17455P | |
| 17455 | M | M.SenSI167ORF3215P (100% identity) | M.EcoCP83ORF17455P | |
| 17460 | IS3 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5835 | DUF3850 domain-containing protein | |||
| 5840 | M | M.EcoPE6ORFDP (92% identity) | GATC | M.EcoCP83ORF5840P |
| 5845 | replication endonuclease | |||
| 11310 | drug/metabolite exporter YedA | |||
| 11315 | V | V.SsoSE61DcmP (99% identity) | V.EcoCP83DcmP | |
| 11320 | M | M.Ecou021DcmP (100% identity) | CCWGG | M.EcoCP83DcmP |
| 11325 | phosphohydrolase | |||
| 14410 | PerC family transcriptional regulator | |||
| 14415 | M | M.Eco869RtORF8605P (100% identity) | M.EcoCP83ORF14415P | |
| 14420 | DUF1382 family protein | |||
| 15000 | 121 aa hypothetical protein | |||
| 15005 | R | Sso8033ORF3755P (99% identity) | EcoCP83ORF15010P | |
| ??? | M | M.SflSTLE1ORF5615P (100% identity) | M.EcoCP83ORF15010P | |
| 15015 | IS3-like element IS2 family transposase | |||
| 15020 | LexA family transcriptional regulator | |||
| 15025 | M | M.Sso90ORF15820P (64% identity) | M.EcoCP83ORF15025P | |
| 15030 | 60 aa hypothetical protein | |||
| 18515 | DNA-binding transcriptional regulator Fis | |||
| 18520 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoCP83ORF18520P |
| 18525 | DUF2556 family protein | |||
| 19140 | ribulose-phosphate 3-epimerase | |||
| 19145 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoCP83DamP |
| 19150 | cell division protein DamX | |||
| 22540 | ead/Ea22-like family protein | |||
| 22545 | M | M.EcoA1ORF1755P (100% identity) | M.EcoCP83ORF22545P | |
| 22550 | Eae protein | |||
| 22615 | PerC family transcriptional regulator | |||
| 22620 | M | M.Sen71968ORF21030P (100% identity) | GATC | M.EcoCP83ORF22620P |
| 22625 | LexA family transcriptional regulator | |||
| 22650 | 67 aa hypothetical protein | |||
| 22655 | M | M.SflLIN17ORF17405P (100% identity) | M.EcoCP83ORF22655P | |
| 22660 | phage holin, lambda family | |||
| plasmid pCP8-3-IncFII | ||||
| 23010 | 97 aa hypothetical protein | |||
| 23015 | M | M.Xca80ORFEP (100% identity) | M.EcoCP83ORF23015P | |
| 23020 | 73 aa hypothetical protein | |||